View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_low_28 (Length: 203)
Name: NF11698_low_28
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 14305483 - 14305672
Alignment:
| Q |
1 |
ctctgaggacatggagataggaaaatgaaccttaaccattgaagtatgaattgtggtgtagaggaagatgaatgtataggtaaaagggtgcatgaaggag |
100 |
Q |
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| T |
14305483 |
ctctgaggacaaggagataggaaaatgaaccttaaccattgaagaatgaattgtggtgtagaagaagatgaatgtaaaggtaaaagggtgcatgaaggag |
14305582 |
T |
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| Q |
101 |
aagttagccatgcagaagtggaagaagacatggctataagattatggaatgataattgttaaggtatcatgttatttgttagaaaatatg |
190 |
Q |
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| T |
14305583 |
aagttagccatgcagaagtagaagaagacatggctataagattatggaatgataattgttaaggtttcatattatttgttagaaaatatg |
14305672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 14283725 - 14283856
Alignment:
| Q |
1 |
ctctgaggacatggagataggaaaatgaaccttaaccattgaagtatgaattgtggtgtagaggaagatgaatgtataggtaaaagggtgcatgaaggag |
100 |
Q |
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| T |
14283725 |
ctctgaggacaaggagataggaaaatgaaccttaaccattgaagtatgaattgtggtgtagaggaagatgaatgtataggtaaaagggtgcatgaaggag |
14283824 |
T |
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| Q |
101 |
aagttagccatgcagaagtggaagaagacatg |
132 |
Q |
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| T |
14283825 |
aagttagccatgcagaagaagaagaagacatg |
14283856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 14321874 - 14321992
Alignment:
| Q |
1 |
ctctgaggacatggagataggaaaatgaaccttaaccattgaagtatgaattgtggtgtagaggaagatgaatgtataggtaaaagggtgcatgaaggag |
100 |
Q |
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| T |
14321874 |
ctctgaggacatggagatagcaaaatgaaccttaaccattgaattatgagttctggtgtagaggaagatgaatctacaggtaaaagggtgcatgaaggag |
14321973 |
T |
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| Q |
101 |
aagttagccatgcagaagt |
119 |
Q |
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| T |
14321974 |
aagttagccatgaagaagt |
14321992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 14270949 - 14271078
Alignment:
| Q |
1 |
ctctgaggacatggagataggaaaatgaaccttaaccattgaagtatgaattgtggtgtagaggaagatgaatgtataggtaaaagggtgcatgaaggag |
100 |
Q |
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| T |
14270949 |
ctctgaggacatggagatcggaaaatgaaccttaaccattgaagaatga-----ggttt-------gatgaatgtataggtaaaagggtgcatgaaggag |
14271036 |
T |
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| Q |
101 |
aagttagccatgcagaagtggaagaagacatggctataagattat |
145 |
Q |
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| T |
14271037 |
aagttagccatgatgaagt---agaagacatggttaaaagattat |
14271078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 25886547 - 25886673
Alignment:
| Q |
4 |
tgaggacatggagataggaaaatgaaccttaaccattgaagtatgaattgtggtgtagaggaagatgaatgtataggtaaaagggtgcatgaaggagaag |
103 |
Q |
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| T |
25886547 |
tgaggacatggagataggaaaagaaaggttaaccattgaagtatgagttgtggtgtagaggaagatgaatctataggtaaaagggtgcatgaaggagaag |
25886646 |
T |
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| Q |
104 |
ttagccatgcagaagtggaagaagacatgg |
133 |
Q |
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| T |
25886647 |
ttagccatgaagaa---gaagaagacatgg |
25886673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 44350406 - 44350509
Alignment:
| Q |
15 |
agataggaaaatgaaccttaaccattgaagtatgaattgtggtgtagaggaagatgaatgtataggtaaaagggtgcatgaaggagaagttagccatgca |
114 |
Q |
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| T |
44350406 |
agataggaaaagaaaggttaaccattgaagtatgagttgtggtgtagaggaagatggatctgtaggtaaaagggtgcatgaaggagaagttagccatgaa |
44350505 |
T |
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| Q |
115 |
gaag |
118 |
Q |
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|||| |
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| T |
44350506 |
gaag |
44350509 |
T |
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