View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_low_3 (Length: 417)
Name: NF11698_low_3
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 58 - 336
Target Start/End: Original strand, 739425 - 739703
Alignment:
| Q |
58 |
gttttatatatgcttttatgttgttgaattccttttgtccgaagaaatttctgttgttgaattacaagtttgttggacaagaattttatattaagacatg |
157 |
Q |
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| T |
739425 |
gttttatatatgcttttatgttgttgaattccttttgtccgaagaaatttctgttgttgaattacaagtttgttagacaagaattttatattaagacatg |
739524 |
T |
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| Q |
158 |
aaaagttattgtacattgcgtgaagtatgcataaaatttgaacacatgcaagttagcatgtagttgcaattagattacgaggttgtttgaatatatactt |
257 |
Q |
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| T |
739525 |
aaaagttattgtacattgcgtgaagtatgcataaaatttgaacacatgcaagttagcatgtagttgcaattagattacgaggttgtttgaatatatactt |
739624 |
T |
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| Q |
258 |
ggtctattaaataattgatggagagtcgaagagaacataacctgataccaaacatccattaagtttgtcttttatttta |
336 |
Q |
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| T |
739625 |
ggtctattaaataattgatggagagtcgaagagaacataacctgataccaaacatacattaagtttgtcttttatttta |
739703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 328 - 394
Target Start/End: Original strand, 739888 - 739954
Alignment:
| Q |
328 |
tttattttatggtgagtgtgcttagacttgtgtttgcaatgatcgaacgtgattcgataagatgtaa |
394 |
Q |
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| T |
739888 |
tttattttatggtgagtgtgcttagacttgtgtttgcaatgatcgaacgtgattcgataagatgtaa |
739954 |
T |
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