View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_low_5 (Length: 397)
Name: NF11698_low_5
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 48797633 - 48797252
Alignment:
| Q |
1 |
aaattaataataataagagatgacaagaattagaaatgttacttagtggggaaccagttgcaaaggatgctctagcaggaaccaaagttggtttaggaaa |
100 |
Q |
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| T |
48797633 |
aaattaataataataagagatgacaagaattagaaatgttacttagtggggaaccagttgcaaaggatgctctagcaggaaccaaagttggtttaggaaa |
48797534 |
T |
|
| Q |
101 |
ttgagcagaggttgcagggttgtttcttgctgtgaaaacacgtgcatctgcaacacaggtaatatagttaaattgagtgctacaatagaaatggaacaga |
200 |
Q |
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| T |
48797533 |
ttgagcagatgttgcagggttgtttcttgctgtgaaaacacgtgcatctgcaacacaggtaatatagttaaattgagtgctacaatagaaatggaacaga |
48797434 |
T |
|
| Q |
201 |
gggttgagacttgagaataacgggttacctcgaagagagacaggaagagaagcagaggattgagcttgagcaagtgccatggttgatgaagtaagttatt |
300 |
Q |
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| T |
48797433 |
gggttgagacttgagaataacgggttacctcgaagagagacaggaagagaagcagagggttgagcttgagcaagtgccatggttgatgaagtaagttatt |
48797334 |
T |
|
| Q |
301 |
gtaacagtcaaattgcaatccttgttccttattatctctacctattcttttgagcaacggatgatgaaacatggccattcat |
382 |
Q |
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| T |
48797333 |
gtaacagtcaaattgcaatccttattccttattatctctacctattcttttgagcaacggatgatgaaacatggccattcat |
48797252 |
T |
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