View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11698_low_9 (Length: 361)

Name: NF11698_low_9
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11698_low_9
NF11698_low_9
[»] chr1 (1 HSPs)
chr1 (19-316)||(48797638-48797927)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 48797927 - 48797638
Alignment:
Q  19 tatctaaattaagaagctttagcttataacacaaatagtcaaatactaatcttttcgtctatatgaatatgcagattttgcaatagaatgagataaaatt 118  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48797927 tatctaaattaagaagctttagcttataacacaaata--------ctaatcttttcgtctatatgaatatgcagattttgcaatagaatgagataaaatt 48797836  T
Q  119 atagatcatttattttttatataagatattaagtggagggcttgtattaattgtagctaaaatcaagtctagtatccaaaagtaatgctaattaccctca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48797835 atagatcatttattttttatataagatattaagtggagggcttgtattaattgtagctaaaatcaagtctagtatccaaaagtaatgctaattaccctca 48797736  T
Q  219 tactacaaaatgaaattctaaaagccaatataatatcggtagtctacactacatatcaagtagaacatatgataaagaattaataagtaactcctttc 316  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48797735 tactacaaattgaaattctaaaagccaatataatatcggtagtctacactacatatcaagtagaacatatgataaagaattaataagtaactcctttc 48797638  T

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