View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11699_high_1 (Length: 435)
Name: NF11699_high_1
Description: NF11699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11699_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 11 - 422
Target Start/End: Original strand, 8474195 - 8474606
Alignment:
| Q |
11 |
cagcacagatgaagttgacgaaaacatatgaaatgcaatttagctgcaagtctctgatcttgatagtcgttttttcttgggaagctccaaagtttagatg |
110 |
Q |
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| T |
8474195 |
cagcacagatgaagttgacgaaaacatatgaaatgcaatttagctgcaagtatctgatcttgatagtcgttttttcttgggaagctccaaagtttagatg |
8474294 |
T |
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| Q |
111 |
gcactagaaatttatttactcatgttattctgatattcatcaatgtgaatgttttcaatgcggcttgtttgttcacatgaaagacataattcactggttt |
210 |
Q |
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| T |
8474295 |
gcactagaaatttatttactcatgttattctgatattcatcaatgtgaatgttttcaatgcggcttgtttgtacacatgaaagacataattcactggttt |
8474394 |
T |
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| Q |
211 |
catcatcttatatgttcatgtttggtgtcgttggcttgttagtccaacctgatcttagcatctctggatttcaatttacatagtttctttggatgtgttt |
310 |
Q |
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| T |
8474395 |
catcatcttatatgttcatgtttggtgtcgttggcttgttagtccaacctgatcttagcatctctggatttcaatttacatagtttctttggatgtgttt |
8474494 |
T |
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| Q |
311 |
atagcaacttattaatcgagattgtatcactcccggtttggaaaggactctctcgactggtaattttgacgttaaaaggttcaaaatgcacaagagtgga |
410 |
Q |
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| T |
8474495 |
atagcaacttattaatcgagattgtatcactcccggtttggaaaggactctctcgactggtaattttgacgttaaaaggttcaaaatgcacaagagtgga |
8474594 |
T |
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| Q |
411 |
gtaacacaggtt |
422 |
Q |
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| T |
8474595 |
gtaacacaggtt |
8474606 |
T |
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