View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11699_high_3 (Length: 317)
Name: NF11699_high_3
Description: NF11699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11699_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 7802260 - 7801980
Alignment:
| Q |
17 |
catcaactcatctctttgttgaaagttccttcttaaaaagttatatgcgctgacaataatcttatttaagaatgatgatttcggatctgccactacctct |
116 |
Q |
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| T |
7802260 |
catcaactcatctctttgttgaaagttccttcctaaaaagttatatgcgctgacaacaatcttatttaagaatgatgattttggatctgccactacctct |
7802161 |
T |
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| Q |
117 |
gtttcccctagcatatacactacacctttttccaatgccttatctataacctttatctcattttcaattccttcaaccatatccagtgattgaattgaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7802160 |
gtttcccctagcatatacactacacctttttccaatgccttatctataacctttatctcattttcaattccttcaaccatatccagtgattgaattgaat |
7802061 |
T |
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| Q |
217 |
tcaaagatgcacatgacaaagatatagatttttcttcatcatcacgatcttcttcacatattgttgttttttcaagatcaa |
297 |
Q |
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| T |
7802060 |
tcaaagatgcacatgacaaagatatagatttttcttcatcatcaccatcttcttcacattttgttgttttttcaagatcaa |
7801980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 7819903 - 7819857
Alignment:
| Q |
17 |
catcaactcatctctttgttgaaagttccttcttaaaaagttatatg |
63 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7819903 |
catcaactcatctctttgttgaaagttccttcttaaaaagttatatg |
7819857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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