View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11699_low_3 (Length: 405)
Name: NF11699_low_3
Description: NF11699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11699_low_3 |
 | |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0011 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 141 - 405
Target Start/End: Original strand, 16726198 - 16726462
Alignment:
| Q |
141 |
atgcaagacgtagatttctttcctctttcccaaaatcttggtaatcatgatcaattttttcccattgaggagaatctgcaggatgtcgaagcattccatc |
240 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16726198 |
atgcaagacgtagatttctttcttctttcccaaaatcttggtaatcatgatcaattttttcccattgaggagaatctgcaggatgtcgaagcattccatc |
16726297 |
T |
|
| Q |
241 |
tgcaacccttccatattcatgccatgtcaagtgctttgcatcttctgcattacgatacatgcgcctaaatcttggtattatcggaaagtaccatagcgct |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| || |
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|
| T |
16726298 |
tgcaacccttccatattcatgccatgtcaagtgctttgcatcttctgcattaagatacatgcgcctaaatcttggtactattggaaagtaccatagcact |
16726397 |
T |
|
| Q |
341 |
ttggctggggctgtttctttcttattatatcgtgatgcaccgcatttaggacacttatctaatga |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
16726398 |
ttggctggggctgtttctttcttattatatcgtgatgcaccgcatttagcacacttatctaatga |
16726462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 14652672 - 14652999
Alignment:
| Q |
8 |
attaacattgtcagcatcatgtacttgcgcttcgtatatagccatggaggcaggttataaatcatcataatcaccggccaagtagtgtgcttactactct |
107 |
Q |
| |
|
|||||||| | || ||||||| |||| |||||| || ||| ||||||||||| ||||||||||| || |||||| ||||| || | |||| | |
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|
| T |
14652672 |
attaacatcgacaacatcatgaacttacgcttcatacataaccatggaggcaagttataaatcaccaaaatcacaggccatacggtatttgggatacttt |
14652771 |
T |
|
| Q |
108 |
gaataccatgagggtttattccatcagtagacaatgcaagacgtagatttctttcctctttcccaaaatcttggtaatcatgatcaattttttcccattg |
207 |
Q |
| |
|
||| |||||| ||||| |||||||||||||||| ||| | |||||||||||| | |||||||||||||| | ||||||||||||||||| |||| || |
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|
| T |
14652772 |
gaaaaccatgtgggttcattccatcagtagacagtgccaagcgtagatttcttgcttctttcccaaaatcaggataatcatgatcaattttagcccactg |
14652871 |
T |
|
| Q |
208 |
aggagaatctgcaggatgtcgaagcattccatctgcaacccttccatattcatgccatgtcaagtgctttgcatcttctgcattacgatacatgcgccta |
307 |
Q |
| |
|
|| ||||||||||| || |||| | | |||||| || || |||||| ||||||||||| || |||||||| || || ||| | |||||||||| |
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| T |
14652872 |
tggcgaatctgcagggtgccgaaacttcccatctctaattctatcatatttgtgccatgtcaaatgttttgcatcaacttcactactaaacatgcgcctg |
14652971 |
T |
|
| Q |
308 |
aatcttggtattatcggaaagtaccata |
335 |
Q |
| |
|
||||| |||||||| |||| ||||||| |
|
|
| T |
14652972 |
aatctcggtattataggaagataccata |
14652999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 405
Target Start/End: Complemental strand, 137972 - 137575
Alignment:
| Q |
8 |
attaacattgtcagcatcatgtacttgcgcttcgtatatagccatggaggcaggttataaatcatcataatcaccggccaagtagtgtgcttactactct |
107 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||||| | ||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||| ||| | |
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|
| T |
137972 |
attaacatagtcaacatcatgaacttgcgcttcatgcatagccatggaggtaggttataaatcagcaaaatcactggccaagtagtgtgcttaccacttt |
137873 |
T |
|
| Q |
108 |
gaataccatgagggtttattccatcagtagacaatgcaagacgtagatttctttcctctttcccaaaatcttggtaatcatgatcaattttttcccattg |
207 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| ||| |||| ||||||||| ||||||| |
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|
| T |
137872 |
gaagaccatgagggtttattccgtcagtagacaatgcaagacgtaggtttcttgtttctttcccaaaatctgagtagtcattatcaattttggcccattg |
137773 |
T |
|
| Q |
208 |
aggagaatctgcaggatgtcgaagcattccatctgcaacccttccatattcatgccatgtcaagtgctttgcatcttctgcattacgatacatgcgccta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||||| |||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
137772 |
aggagaatctgcaggatgtcgaagcattccatcattaaccctttcatttgcatgccatgttaagttctttgcatcttccgcattacgatacatgcgccta |
137673 |
T |
|
| Q |
308 |
aatcttggtattatcggaaagtaccatagcgctttggctggggctgtttctttcttattatatcgtgatgcaccgcatttaggacacttatctaatga |
405 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||||| ||| ||||||||||||| ||||||||||| || | |||||||||||| ||| |||||| |
|
|
| T |
137672 |
aatcttggtattattggaaaataccatagcactttggatggacctgtttctttcttcttatatcgtgaagcgctacatttaggacacatatttaatga |
137575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 405
Target Start/End: Complemental strand, 143196 - 142799
Alignment:
| Q |
8 |
attaacattgtcagcatcatgtacttgcgcttcgtatatagccatggaggcaggttataaatcatcataatcaccggccaagtagtgtgcttactactct |
107 |
Q |
| |
|
|||||||| |||| ||||||| |||||| |||| | ||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||| ||| | |
|
|
| T |
143196 |
attaacatagtcaacatcatgaacttgcacttcatgcatagccatggaggtaggttataaatcagcaaaatcactggccaagtagtgtgcttaccacttt |
143097 |
T |
|
| Q |
108 |
gaataccatgagggtttattccatcagtagacaatgcaagacgtagatttctttcctctttcccaaaatcttggtaatcatgatcaattttttcccattg |
207 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| ||| |||| ||||||| | ||||||| |
|
|
| T |
143096 |
gaagaccatgagggtttattccatcagtagacaatgtaagacgtaggtttcttgtttctttcccaaaatccgagtagtcattatcaattatggcccattg |
142997 |
T |
|
| Q |
208 |
aggagaatctgcaggatgtcgaagcattccatctgcaacccttccatattcatgccatgtcaagtgctttgcatcttctgcattacgatacatgcgccta |
307 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| ||||||| ||| | |||||||||| |||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
142996 |
aggagaatctgtaggatgtcgaagtattccatcattaaccctttcatttgcatgccatgttaagttctttgcatcttccgcattacgatacatgcgccta |
142897 |
T |
|
| Q |
308 |
aatcttggtattatcggaaagtaccatagcgctttggctggggctgtttctttcttattatatcgtgatgcaccgcatttaggacacttatctaatga |
405 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||| | ||| ||||||||||||| ||||||||||| || | |||||||||||| ||| |||||| |
|
|
| T |
142896 |
aatcttggtattattggaaaataccatagcacttttgatggacctgtttctttcttcttatatcgtgaagcgctacatttaggacacatatttaatga |
142799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 405
Target Start/End: Complemental strand, 20749099 - 20748702
Alignment:
| Q |
8 |
attaacattgtcagcatcatgtacttgcgcttcgtatatagccatggaggcaggttataaatcatcataatcaccggccaagtagtgtgcttactactct |
107 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||||| | ||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||| ||| | |
|
|
| T |
20749099 |
attaacatagtcaacatcatgaacttgcgcttcatgcatagccatggaggtaggttataaatcagcaaaatcactggccaagtagtgtgcttaccacttt |
20749000 |
T |
|
| Q |
108 |
gaataccatgagggtttattccatcagtagacaatgcaagacgtagatttctttcctctttcccaaaatcttggtaatcatgatcaattttttcccattg |
207 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| ||| |||| ||||||||| ||||||| |
|
|
| T |
20748999 |
gaagaccatgagggtttattccgtcagtagacaatgcaagacgtaggtttcttgtttctttcccaaaatctgagtagtcattatcaattttggcccattg |
20748900 |
T |
|
| Q |
208 |
aggagaatctgcaggatgtcgaagcattccatctgcaacccttccatattcatgccatgtcaagtgctttgcatcttctgcattacgatacatgcgccta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||||| |||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
20748899 |
aggagaatctgcaggatgtcgaagcattccatcattaaccctttcatttgcatgccatgttaagttctttgcatcttccgcattacgatacatgcgccta |
20748800 |
T |
|
| Q |
308 |
aatcttggtattatcggaaagtaccatagcgctttggctggggctgtttctttcttattatatcgtgatgcaccgcatttaggacacttatctaatga |
405 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||||| ||| ||||||||||||| ||||||||||| || | |||||||||||| ||| |||||| |
|
|
| T |
20748799 |
aatcttggtattattggaaaataccatagcactttggatggacctgtttctttcttcttatatcgtgaagcgctacatttaggacacatatttaatga |
20748702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 6773292 - 6772965
Alignment:
| Q |
8 |
attaacattgtcagcatcatgtacttgcgcttcgtatatagccatggaggcaggttataaatcatcataatcaccggccaagtagtgtgcttactactct |
107 |
Q |
| |
|
|||||||| | || ||||||| |||| |||||| || ||||||||||||||| ||||||||||| || |||||| ||||| || | |||| | |
|
|
| T |
6773292 |
attaacatagacaacatcatgaacttacgcttcatacatagccatggaggcaagttataaatcaccaaaatcacaggccatacggtatttgggatacttt |
6773193 |
T |
|
| Q |
108 |
gaataccatgagggtttattccatcagtagacaatgcaagacgtagatttctttcctctttcccaaaatcttggtaatcatgatcaattttttcccattg |
207 |
Q |
| |
|
||| |||||| ||||| |||||||||||||||| ||| | ||||||||||||| | ||||| |||||||| | ||||||||||||||||| |||| || |
|
|
| T |
6773192 |
gaaaaccatgtgggttcattccatcagtagacagtgccaaacgtagatttcttgcttcttttccaaaatcaggataatcatgatcaattttagcccactg |
6773093 |
T |
|
| Q |
208 |
aggagaatctgcaggatgtcgaagcattccatctgcaacccttccatattcatgccatgtcaagtgctttgcatcttctgcattacgatacatgcgccta |
307 |
Q |
| |
|
|| ||||||||||| ||||||| | | |||||| || || |||||| ||||||||||| || |||||||| || || ||| | |||||||||| |
|
|
| T |
6773092 |
tggcgaatctgcagggtgtcgaaacttcccatctctaattctatcatatttgtgccatgtcaaatgttttgcatcaacttcactactaaacatgcgcctg |
6772993 |
T |
|
| Q |
308 |
aatcttggtattatcggaaagtaccata |
335 |
Q |
| |
|
||||| |||||||| |||| ||||||| |
|
|
| T |
6772992 |
aatctcggtattataggaagataccata |
6772965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 34211088 - 34211415
Alignment:
| Q |
8 |
attaacattgtcagcatcatgtacttgcgcttcgtatatagccatggaggcaggttataaatcatcataatcaccggccaagtagtgtgcttactactct |
107 |
Q |
| |
|
|||||||| | || ||||||| |||| |||||| || ||| ||||||||||| ||||||||||| || |||||| ||||| || | |||| | |
|
|
| T |
34211088 |
attaacatcgacaacatcatgaacttacgcttcatacataaccatggaggcaagttataaatcaccaaaatcacaggccatacggtatttgggatacttt |
34211187 |
T |
|
| Q |
108 |
gaataccatgagggtttattccatcagtagacaatgcaagacgtagatttctttcctctttcccaaaatcttggtaatcatgatcaattttttcccattg |
207 |
Q |
| |
|
||| |||||| | ||| |||||||||||||||| ||| | |||||||||||| | |||||||||||||| | ||||||||||||||||| |||| || |
|
|
| T |
34211188 |
gaaaaccatgtgcgttcattccatcagtagacagtgccaagcgtagatttcttgcttctttcccaaaatcaggataatcatgatcaattttagcccactg |
34211287 |
T |
|
| Q |
208 |
aggagaatctgcaggatgtcgaagcattccatctgcaacccttccatattcatgccatgtcaagtgctttgcatcttctgcattacgatacatgcgccta |
307 |
Q |
| |
|
|| ||||||||||| || |||| | | |||||| || || |||||| ||||||||||| || |||||||| || || ||| | ||||||||| |
|
|
| T |
34211288 |
tggcgaatctgcagggtgccgaaacttcccatctctaattctatcatatttgtgccatgtcaaatgttttgcatcaacttcactactaaacatgcgcccg |
34211387 |
T |
|
| Q |
308 |
aatcttggtattatcggaaagtaccata |
335 |
Q |
| |
|
||||| |||||||| |||| ||||||| |
|
|
| T |
34211388 |
aatctcggtattataggaagataccata |
34211415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 129747 - 130074
Alignment:
| Q |
8 |
attaacattgtcagcatcatgtacttgcgcttcgtatatagccatggaggcaggttataaatcatcataatcaccggccaagtagtgtgcttactactct |
107 |
Q |
| |
|
|||||||| | || ||||||| |||| |||||| || ||| ||||||||||| ||||||||||| || |||||| ||||| |||| |||| | |
|
|
| T |
129747 |
attaacatcgacaacatcatgaacttacgcttcatacataaccatggaggcaagttataaatcaccaaaatcacaggccatacggtgtttgggatacttt |
129846 |
T |
|
| Q |
108 |
gaataccatgagggtttattccatcagtagacaatgcaagacgtagatttctttcctctttcccaaaatcttggtaatcatgatcaattttttcccattg |
207 |
Q |
| |
|
||| |||||| ||||| |||||||||||||||| ||| | |||||||||||| | ||||||||||||| | ||||||||||||||||| |||| || |
|
|
| T |
129847 |
gaaaaccatgtgggttcattccatcagtagacagtgccaagcgtagatttcttgcttctttcccaaaattaggataatcatgatcaattttagcccactg |
129946 |
T |
|
| Q |
208 |
aggagaatctgcaggatgtcgaagcattccatctgcaacccttccatattcatgccatgtcaagtgctttgcatcttctgcattacgatacatgcgccta |
307 |
Q |
| |
|
|| ||||||||||| ||||||| | | ||||| || || |||||| ||||||||||| || |||||||| || || ||| | |||||||||| |
|
|
| T |
129947 |
tggcgaatctgcagggtgtcgaaacttctcatctctaattctatcatatttgtgccatgtcaaatgttttgcatcaacttcactactaaacatgcgcctg |
130046 |
T |
|
| Q |
308 |
aatcttggtattatcggaaagtaccata |
335 |
Q |
| |
|
||||| |||||||| |||| ||||||| |
|
|
| T |
130047 |
aatctcggtattataggaagataccata |
130074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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