View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11699_low_4 (Length: 359)
Name: NF11699_low_4
Description: NF11699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11699_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 46424130 - 46424267
Alignment:
| Q |
17 |
gacatcacaccatccattggatcttatatttaatgaattcaccgcttcatcttaaaagagcaacaactagggttcataaacaagtaaataataataacac |
116 |
Q |
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| T |
46424130 |
gacaacacaccatccattggatcttatatttaatgaattcatcgcttcatcttaaaagagcaacaac-atggtttttaaacaagtaaataacaatagcac |
46424228 |
T |
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| Q |
117 |
aaagcacgcaagtgttttacggccagtaattgcttttaat |
156 |
Q |
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| T |
46424229 |
aaagcacacacatgatttccggccagtaatt-cttttaat |
46424267 |
T |
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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 9452935 - 9453031
Alignment:
| Q |
8 |
aatgagatggacatcacaccatccattggatcttatatttaatgaattcaccgcttcatcttaaaagagcaacaactagggttcataaacaagtaaata |
106 |
Q |
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| T |
9452935 |
aatgagatgg-caacacaccatccattagatcttatatttaatgaatttaccgcttcatcttaaaagagcaacaa-tagggttcataaacaagtaaata |
9453031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 218 - 342
Target Start/End: Complemental strand, 21546597 - 21546474
Alignment:
| Q |
218 |
tattttataatttctaatgaatatttgacaataaagcattgcaaagcaaacccacctttaatcgctcctaatcagctaccnnnnnnntatctcccattaa |
317 |
Q |
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| T |
21546597 |
tattttataatttctaatgaatatttgacagtaaagcgttgcacatcaaatccacctttaatcgctccta-tcagctgccaaaaaaatatctcccattca |
21546499 |
T |
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| Q |
318 |
tttcccatacattaatttggaagtt |
342 |
Q |
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| T |
21546498 |
tttcccatacattaatttggaagtt |
21546474 |
T |
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