View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1169_high_10 (Length: 463)

Name: NF1169_high_10
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1169_high_10
NF1169_high_10
[»] chr4 (2 HSPs)
chr4 (358-455)||(22182740-22182837)
chr4 (358-423)||(22165518-22165585)
[»] chr8 (1 HSPs)
chr8 (306-360)||(8270765-8270819)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 358 - 455
Target Start/End: Original strand, 22182740 - 22182837
Alignment:
Q  358 ggtgtgataggctaaccgtgttgggttagggcgttatgggtgtcacttttgttttgcggaacttagtgtttggctgggactatctaggttcctatgct 455  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22182740 ggtgtgataggctaaccgtgttgggttagcgcgttatgggtgtcacttttgttttgcggaacttagtgtttggctgggactatctaggttcctgtgct 22182837  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 22165518 - 22165585
Alignment:
Q  358 ggtgtgataggctaaccgtgttgggttagggc--gttatgggtgtcacttttgttttgcggaacttag 423  Q
    |||||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  22165518 ggtgtgataggcgaaccgtgtttggttagggcttgttatgggtgtcacttttgttttgcggaacttag 22165585  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 8270819 - 8270765
Alignment:
Q  306 gtagtggtttcaacactcgttctaagctttcttatttgtttcaatgtattttggt 360  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8270819 gtagttgtttcaacactcgttataagctttcttatttgtttcaatgtattttggt 8270765  T

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