View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1169_high_13 (Length: 443)
Name: NF1169_high_13
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 97 - 433
Target Start/End: Complemental strand, 4130876 - 4130540
Alignment:
| Q |
97 |
cttcctcccccgactccatcagcaccacactttttctgcagcaaacaatttctaacaacatggcaccaaagctgtaaacatccactttagccgtcacagg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4130876 |
cttcctcccccgactccatcagcaccacactttttctgcagcaaacaatttctaacaacatggcaccaaagctgtaaacatccactttagccgtcacagg |
4130777 |
T |
|
| Q |
197 |
gacattcttgaaccattcaggagccacatatccccgcgttcctcggatcattgtatttgttctactttgatcagccaacaacaacttggccaaaccaaag |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4130776 |
gacattcttgaaccattcaggagccacatatccccgcgttcctcggaccattgtatttgttctactttgatcagccaacaacaacttggccaaaccaaag |
4130677 |
T |
|
| Q |
297 |
tcagagatctttgccgtaaaatactcatctatgagtatattttgaggctttatgtcgcaatgaatgataggagtgtcacactcttcatgtaaatacacca |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4130676 |
tcagagatctttgccgtaaaatactcatctatgagtatattttgaggctttatgtcgcaatgaatgataggagtgtcacactcttcatgtaaatacacca |
4130577 |
T |
|
| Q |
397 |
accctcttgcgatccccaaagcaaatccaaccctttg |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4130576 |
accctcttgcgatccccaaagcaaatccaaccctttg |
4130540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 97 - 433
Target Start/End: Complemental strand, 4107695 - 4107359
Alignment:
| Q |
97 |
cttcctcccccgactccatcagcaccacactttttctgcagcaaacaatttctaacaacatggcaccaaagctgtaaacatccactttagccgtcacagg |
196 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4107695 |
cttcctcccctgactccatcagcaccacactttttctgcagcaaacaatttccaacaacatggcaccaaagctgtaaacatccactttagccgtcactgg |
4107596 |
T |
|
| Q |
197 |
gacattcttgaaccattcaggagccacatatccccgcgttcctcggatcattgtatttgttctactttgatcagccaacaacaacttggccaaaccaaag |
296 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| || ||||| || ||| |
|
|
| T |
4107595 |
aacattcttgaaccattcaggagctacatatcctcgcgttcctcggatcatggtttttgttctactttgatcggccaacaacaatttagccaatccgaag |
4107496 |
T |
|
| Q |
297 |
tcagagatctttgccgtaaaatactcatctatgagtatattttgaggctttatgtcgcaatgaatgataggagtgtcacactcttcatgtaaatacacca |
396 |
Q |
| |
|
||||| |||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4107495 |
tcagaaatctttgctgtgaagtactcatctatgagtatattttgaggctttatgtcacaatgaatgatgggagtgtcacactcttcatgtaaatacacca |
4107396 |
T |
|
| Q |
397 |
accctcttgcgatccccaaagcaaatccaaccctttg |
433 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
4107395 |
accctcttgcaatccccaaagcaaatccaatcctttg |
4107359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 394
Target Start/End: Complemental strand, 3035818 - 3035753
Alignment:
| Q |
329 |
gagtatattttgaggctttatgtcgcaatgaatgataggagtgtcacactcttcatgtaaatacac |
394 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
3035818 |
gagtatgttttgaggctttatgtcacaatgaatgatcctagtgatgcactcttcatgtaaatacac |
3035753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 47068776 - 47068727
Alignment:
| Q |
336 |
ttttgaggctttatgtcgcaatgaatgataggagtgtcacactcttcatg |
385 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| |||||||||||||| |
|
|
| T |
47068776 |
ttttgaggctttaagtcgcaatgaatgattggagcatcacactcttcatg |
47068727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University