View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1169_high_22 (Length: 379)

Name: NF1169_high_22
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1169_high_22
NF1169_high_22
[»] chr1 (1 HSPs)
chr1 (47-334)||(6477276-6477567)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 47 - 334
Target Start/End: Complemental strand, 6477567 - 6477276
Alignment:
Q  47 catgcaagtgaaattattgatgcgtcataatccaaactcttaatcaagacaataactataattccgtgtcaatataaaaagacaagaatataatgggttt 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6477567 catgcaagtgaaattattgatgcgtcataatccaaactcttaatcaagacaataactataattccgtgtcaatataaaaagacaagaatataatgggttt 6477468  T
Q  147 tgcacatgcgaatcgaataaact-cggtcaagctggtacagatcagaaagttcctaatctctgacacgttactgaaaataaata---gatgatattataa 242  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||||    
T  6477467 tgcacatgcgaatcgaacaaactacggtcaagctggtacagatcagaaacttcctaatctctgacacgttactgaaaataaatacatgatgatattataa 6477368  T
Q  243 agacaaaacaaatcactgctgttttaaattattgtgttttgtaatgacaaataaattattgagttttttaataatacaaaaaacgttgagtt 334  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6477367 agacaaaacaaatcactgctgtttaaaattactgtgttttgtaatgacaaataaattattgagttttttaataatacaaaaatcgttgagtt 6477276  T

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