View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_high_23 (Length: 373)
Name: NF1169_high_23
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 151 - 324
Target Start/End: Original strand, 40460994 - 40461167
Alignment:
| Q |
151 |
atactgaattaatctcagacgaagggacaaagattctttgtcctcaatttgaaggtacctacctacctacaaaggttaaaggccgcttaattcgttcatc |
250 |
Q |
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| T |
40460994 |
atactgaattaatctcagacgaagggaaaaagattttttgtcctcaatttgaaggtacctacctacctacaaaggttaaaggccgcttgattcgttcatc |
40461093 |
T |
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| Q |
251 |
acaaattcacagattcgctttatgtatatacatcagtccgaatgaagaaaaaatcatgcacaattcactgcaag |
324 |
Q |
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| T |
40461094 |
acaaattcacagattcgctttatgtatatacatcagttcgaatgaagaaaaaatcatgcacaattcactgcaag |
40461167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 40460827 - 40460972
Alignment:
| Q |
13 |
aatattttatgtatagagtattttacaaagttatctttcatttgtgttagtagaaaaagcaattagaagaatttgaaaaggagaaattgcactaattgaa |
112 |
Q |
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| T |
40460827 |
aatattttatgtatagagtattttacaaagttatctttcatttgtgttagtagaaaaagcaattagaagaatttgaaaaggagaaattacactaattgaa |
40460926 |
T |
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| Q |
113 |
aaagaagcattaatgcttctttaatatagtaaaattacatactgaa |
158 |
Q |
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| T |
40460927 |
aaagaagcattaatgcttcgttaatatagtaaaattacatactgaa |
40460972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 40379021 - 40378875
Alignment:
| Q |
13 |
aatattttatgtatagagtattttacaaagttatctttcatttgtgttagtagaaaaagcaattagaagaatttgaaaaggagaaattgcactaatt--- |
109 |
Q |
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| T |
40379021 |
aatattttatgtatagtgtattttacaaagttatcattcatctgtgttagtagaaaaataaattagaagaaattgaaagggagaaattgcactaattgaa |
40378922 |
T |
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| Q |
110 |
-----gaaaaagaagcattaatgcttctttaatatagtaaaattaca |
151 |
Q |
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| T |
40378921 |
agagagaaaaaaaagcattaacgcttcgttaatatagtaaaattaca |
40378875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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