View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_high_28 (Length: 349)
Name: NF1169_high_28
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 4 - 306
Target Start/End: Complemental strand, 39693881 - 39693579
Alignment:
| Q |
4 |
acgcattagggtctgacatcaaaaagtagcactccactatctgcgactaaaatctacgaccttgattcttcatcatttctattgaaacaaaaagaaaatc |
103 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39693881 |
acgcattagggtttgacatcaaaaagtagcactccactatctgcgactaaaatctacgaccttgattcttcatcatttctattgaaacagaaagaaaatc |
39693782 |
T |
|
| Q |
104 |
atcacaacaatggactccaacaccaaaagcaatttctccactcattaatcttctatgaactttatcaaccatgcatttagagagaattaaccatgatttt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39693781 |
atcacaacaatggactccaacaccaaaagcaatttctccactcattaatcttctatgaactttatcaaccatgcatttagagagaattaaccatgatttt |
39693682 |
T |
|
| Q |
204 |
caagtgttcatgtatgtggtgtcattgtaaacttcttgtaaagttgatcaatcacaaatcaacatcagttgtaagcttgacataaccaaaccaaagtaca |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39693681 |
caagtgttcatgtatgtggtgtcattgtaaacttcttgtaaagttgatcaatcacaaatcaacatcagttgtaagcttgacataaccaaaccaaagtaca |
39693582 |
T |
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| Q |
304 |
cct |
306 |
Q |
| |
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||| |
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| T |
39693581 |
cct |
39693579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 39693570 - 39693523
Alignment:
| Q |
293 |
accaaagtacacctagtgctttgttctaggcttttttattagtataat |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39693570 |
accaaagtacacctagtgctttgttctaggcttttttattagtataat |
39693523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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