View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1169_high_40 (Length: 297)

Name: NF1169_high_40
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1169_high_40
NF1169_high_40
[»] chr2 (1 HSPs)
chr2 (15-297)||(39268634-39268928)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 39268634 - 39268928
Alignment:
Q  15 agccctagctgttgcttcatttagactttgttgtcgattataatagcattttatttcatgtgtcagttgaaagtgatgtatt------------gtctgg 102  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||    
T  39268634 agcccaagctgttgattcatttagactttgttgtcgattataatagcattttatttcatgtgtcagttgaaagtgatgtattagtactgaaaatgtctgg 39268733  T
Q  103 gcagagtgtattttggttaaggtttctagaggaaatttcagaaaaatttgtctgggcagtgtgtattttggtgaaggattctagaagaaatttttagatg 202  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39268734 gcagagtgtattttgtttaaggtttctagaggaaatttctgaaaaatttgtctgggcagtgtgtattttggtgaaggattctagaggaaatttttagatg 39268833  T
Q  203 caacatgatcatatcaaggctcattgattcttgtttgaagtatgatgattgacttgagtctacacgcatttatgcataacatttttgttgacttt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39268834 caacatgatcatatcaaggctcattgattcttgtttgaagtatgatgattgacttgagtctacacgcatttatgcataacatttttgttgacttt 39268928  T

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