View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_high_54 (Length: 251)
Name: NF1169_high_54
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 63 - 227
Target Start/End: Original strand, 42983916 - 42984080
Alignment:
| Q |
63 |
aaaacctcatggattcttactagagatttacaactagtgcaaccttccaggattcctcaagacattcaaagaccttgtcatcaatgtacatcatagggca |
162 |
Q |
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| T |
42983916 |
aaaacctcatggattcttactagagatttacaactagtgcaaccttccaggattcctcaagacattcaaagaccttgtcatcaatgtacatcatagggca |
42984015 |
T |
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| Q |
163 |
tgagcgattctcgtcttgacaataaagttatgcaagattctctttgtaatgtggagtcatggcga |
227 |
Q |
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| T |
42984016 |
tgagcgattctcgtcttgacaataaagttacgcaagattctctttgtaatgtggagtcatggcga |
42984080 |
T |
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Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 42983824 - 42983903
Alignment:
| Q |
1 |
tgacaatcatcctcaagatcaaatttgaccatggtgaaaccattgccaatatccatgatttcaaaacctcatggattctt |
80 |
Q |
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| T |
42983824 |
tgacaatcatcctcaagatcaaatttgaccatggtgaaaccattgccaatatccatgatttcaaaacctcatggattctt |
42983903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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