View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_high_56 (Length: 247)
Name: NF1169_high_56
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_high_56 |
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| [»] scaffold0037 (2 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 32461 - 32361
Alignment:
| Q |
1 |
aatcatcttagaaagattgaagttgaacaagagtgtaaagttagggtcctgtctcggttttttcataaagtcgaagagtgtaaagtggagcatattccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32461 |
aatcatcttagaaagattgaagttgaacaagagtgtaaagttagggtcctgtctcgtttttttcataaagtcgaagagtgtaaagtggagcatattccac |
32362 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
32361 |
a |
32361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 103103 - 103203
Alignment:
| Q |
1 |
aatcatcttagaaagattgaagttgaacaagagtgtaaagttagggtcctgtctcggttttttcataaagtcgaagagtgtaaagtggagcatattccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103103 |
aatcatcttagaaagattgaagttgaacaagagtgtaaagttagggtcctgtctcgtttttttcataaagtcgaagagtgtaaagtggagcatattccac |
103202 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
103203 |
a |
103203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 10427052 - 10426956
Alignment:
| Q |
1 |
aatcatcttagaaagattgaagttgaacaagagtgtaaagttagggtcctgtctcggttttttcataaagtcgaagagtgtaaagtggagcatattc |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
10427052 |
aatcatcttagaaagattgaagttgaacaagagtgtaaagttagggtcctgtctcgttattttcataaagtcgaagagtgtaaagtggagcatattc |
10426956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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