View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1169_high_6 (Length: 558)

Name: NF1169_high_6
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1169_high_6
NF1169_high_6
[»] chr3 (14 HSPs)
chr3 (16-529)||(46951370-46951883)
chr3 (49-419)||(46958673-46959043)
chr3 (246-420)||(46955816-46955990)
chr3 (36-212)||(46956045-46956221)
chr3 (217-419)||(46995737-46995939)
chr3 (264-419)||(46980909-46981064)
chr3 (273-419)||(47001677-47001823)
chr3 (266-419)||(46997985-46998138)
chr3 (327-419)||(46974922-46975014)
chr3 (459-530)||(46997871-46997942)
chr3 (468-517)||(46980810-46980859)
chr3 (459-530)||(46995611-46995682)
chr3 (459-517)||(46974821-46974879)
chr3 (39-123)||(46996030-46996114)


Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Complemental strand, 46951883 - 46951370
Alignment:
Q  16 atttcattcataatcttttagagaaactcaaacactccctctctcttgctttattccatttctatcctttatcaggtcgtcttgttacacaaaaatccca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46951883 atttcattcataatcttttagagaaactcaaacactccctctctcttgctttatttcatttctatcctttatcaggtcgtcttgttacacaaaaatccca 46951784  T
Q  116 agaccctcccacttataatattttcgttgattgcagtaacaataactccggagctagattcatccatgcaactttggatgcaacagtatctgatatcatg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46951783 agaccctcccacttataatattttcgttgattgcagtaacaataactccggagctagattcatccatgcaactttggatgcaacagtatctgatatcatg 46951684  T
Q  216 acaccaattgatgttccatcagttgttaagtcattgtttgatcttaataaagcaatcaaccacgacggtcacaccatgccgttgttatccatccaagtca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46951683 acaccaattgatgttccatcagttgttaagtcattgtttgatcttaataaagcaatcaaccacgacggtcacaccatgccgttgttatccatccaagtca 46951584  T
Q  316 ctgagctagtagatggtgttttcataggttgttctatgaatcactatattggtgatggaacttcttattggaatttctttaatacatggtctgaaatatt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46951583 ctgagctagtagatggtgttttcataggttgttctatgaatcactatattggtgatggaacttcttattggaatttctttaatacatggtctgaaatatt 46951484  T
Q  416 tcaaggccaaggccatgatgttcgcatttcacgccaaccctcacacaatcgttggtttccagaaggttatggtccactgatcaatcttccattcaaacat 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46951483 tcaaggccaaggccatgatgttcgcatttcacgccaaccctcacacattcgttggtttccagaaggttatggtccactgatcaatcttccattcaaacat 46951384  T
Q  516 catgacgagattat 529  Q
    ||||||||||||||    
T  46951383 catgacgagattat 46951370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 49 - 419
Target Start/End: Complemental strand, 46959043 - 46958673
Alignment:
Q  49 actccctctctcttgctttattccatttctatcctttatcaggtcgtcttgttacacaaaaatcccaagaccctcccacttataatattttcgttgattg 148  Q
    |||||||||||| |||| | ||||||||||||||| | || || || ||||| || || ||| | ||| |||||||| ||||||  ||||| ||||||||    
T  46959043 actccctctctcatgctcttttccatttctatcctctttctggccgccttgtcacccacaaaactcaacaccctccctcttataccatttttgttgattg 46958944  T
Q  149 cagtaacaataactccggagctagattcatccatgcaactttggatgcaacagtatctgatatcatgacaccaattgatgttccatcagttgttaagtca 248  Q
     |||||||||||| | ||||||||||||||| |||| ||    || |  ||  ||||||||||| |  ||||  ||||||||||  || ||||| |||||    
T  46958943 tagtaacaataaccctggagctagattcatctatgcgaccgcagacgtgaccatatctgatatcctctcacctgttgatgttcctccaattgttgagtca 46958844  T
Q  249 ttgtttgatcttaataaagcaatcaaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgtt 348  Q
    || |||||||| || |||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||| ||||||||||||||||||||||    
T  46958843 ttctttgatctcaacaaagcaatcaaccacgacggtcacaccatgccattgttatcaattcaagtcacagagctagtggatggtgttttcataggttgtt 46958744  T
Q  349 ctatgaatcactatattggtgatggaacttcttattggaatttctttaatacatggtctgaaatatttcaa 419  Q
    |  ||||||| | |||||||||||| || ||||  |||||||| ||||||| ||||||||| |||||||||    
T  46958743 ccctgaatcattgtattggtgatggtacctctttctggaatttttttaatatatggtctgagatatttcaa 46958673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 246 - 420
Target Start/End: Complemental strand, 46955990 - 46955816
Alignment:
Q  246 tcattgtttgatcttaataaagcaatcaaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggtt 345  Q
    ||||||||||||||  ||| ||||||||| || || |||||||||||||||||| ||||||| |||||||| ||  |||  |||||||||||||||||||    
T  46955990 tcattgtttgatctcgatagagcaatcaatcatgatggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggtt 46955891  T
Q  346 gttctatgaatcactatattggtgatggaacttcttattggaatttctttaatacatggtctgaaatatttcaag 420  Q
    |||| ||||| || | |||||||||||| ||||||| |||||||||||| |||| |||||||||||||| |||||    
T  46955890 gttccatgaaccattgtattggtgatgggacttctttttggaatttcttcaatatatggtctgaaatatatcaag 46955816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 36 - 212
Target Start/End: Complemental strand, 46956221 - 46956045
Alignment:
Q  36 gagaaactcaaacactccctctctcttgctttattccatttctatcctttatcaggtcgtcttgttacacaaaaatcccaagaccctcccacttataata 135  Q
    ||||| |||||||||||| |||||| |||| | ||||||||||||||| | || || || ||||| || || ||| | |||||||||||| ||||||  |    
T  46956221 gagaagctcaaacactccttctctcatgctcttttccatttctatcctctttctggccgccttgtcacccacaaaactcaagaccctccctcttatacca 46956122  T
Q  136 ttttcgttgattgcagtaacaataactccggagctagattcatccatgcaactttggatgcaacagtatctgatatc 212  Q
    |||| ||||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||||| ||| |||||||    
T  46956121 tttttgttgattgcagtaacgataacaccagagctagattcatctatgcaactctggatgcaacaatatatgatatc 46956045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 217 - 419
Target Start/End: Complemental strand, 46995939 - 46995737
Alignment:
Q  217 caccaattgatgttccatcagttgttaagtcattgtttgatcttaataaagcaatcaaccacgacggtcacaccatgccgttgttatccatccaagtcac 316  Q
    ||||||||||||| ||| |  ||||| | ||||| ||||| | | | | |||| ||||||| || || ||||||||| | ||||| ||||| ||||||||    
T  46995939 caccaattgatgtcccacccattgttcattcattctttgaccatcacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcac 46995840  T
Q  317 tgagctagtagatggtgttttcataggttgttctatgaatcactatattggtgatggaacttcttattggaatttctttaatacatggtctgaaatattt 416  Q
    |||  || |||| |||||||||||||||||||| ||||| |||  | |||||||||||||| |||||||||||||||||||||||   ||||| ||||||    
T  46995839 tgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtgatggaactgcttattggaatttctttaatacactttctgagatattt 46995740  T
Q  417 caa 419  Q
    |||    
T  46995739 caa 46995737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 419
Target Start/End: Complemental strand, 46981064 - 46980909
Alignment:
Q  264 aaagcaatcaaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactata 363  Q
    |||||| ||||||| || ||||| |||||| | ||||| || || |||||||||||  ||||||||||||||||||| |||||||| |||||||| | |     
T  46981064 aaagcagtcaaccatgatggtcataccatgtctttgttgtctattcaagtcactgaattagtagatggtgttttcattggttgttccatgaatcattgtc 46980965  T
Q  364 ttggtgatggaacttcttattggaatttctttaatacatggtctgaaatatttcaa 419  Q
    || ||||||||||  |||||||||||||||| || ||||  ||||| |||||||||    
T  46980964 tttgtgatggaacagcttattggaatttcttcaacacattttctgagatatttcaa 46980909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 273 - 419
Target Start/End: Complemental strand, 47001823 - 47001677
Alignment:
Q  273 aaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatattggtgatg 372  Q
    ||||| || |||||||||||| | ||||| || || |||||||||||  || | ||||||||||||||||||||||| |||||||| | |||||||||||    
T  47001823 aaccatgatggtcacaccatgtctttgttgtctattcaagtcactgaattattggatggtgttttcataggttgttccatgaatcattgtattggtgatg 47001724  T
Q  373 gaacttcttattggaatttctttaatacatggtctgaaatatttcaa 419  Q
    ||||  |||||||||||||||| || ||||  || || |||||||||    
T  47001723 gaacagcttattggaatttcttcaacacattttcggagatatttcaa 47001677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 266 - 419
Target Start/End: Complemental strand, 46998138 - 46997985
Alignment:
Q  266 agcaatcaaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatatt 365  Q
    |||| ||||||| || || ||||||||| | ||||| ||||| ||||| |||||  || | ||| ||||||| ||||||||||| |||||||| | ||||    
T  46998138 agcagtcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtatt 46998039  T
Q  366 ggtgatggaacttcttattggaatttctttaatacatggtctgaaatatttcaa 419  Q
    ||||||||||||  ||||||||||||||||||  |||  ||||| |||||||||    
T  46998038 ggtgatggaactggttattggaatttctttaactcattttctgagatatttcaa 46997985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 327 - 419
Target Start/End: Complemental strand, 46975014 - 46974922
Alignment:
Q  327 gatggtgttttcataggttgttctatgaatcactatattggtgatggaacttcttattggaatttctttaatacatggtctgaaatatttcaa 419  Q
    ||||||||||| ||||||||||| |||||||| | ||| |||||||| |||  ||||||||||||||||||  |||  ||||| |||||||||    
T  46975014 gatggtgtttttataggttgttccatgaatcattgtataggtgatgggactggttattggaatttctttaactcattttctgagatatttcaa 46974922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 459 - 530
Target Start/End: Complemental strand, 46997942 - 46997871
Alignment:
Q  459 cacaatcgttggtttccagaaggttatggtccactgatcaatcttccattcaaacatcatgacgagattatt 530  Q
    |||||| | |||||||||||||||||||||||| | ||||  ||||| |||||||||||||||||| |||||    
T  46997942 cacaatagatggtttccagaaggttatggtccaatcatcagccttcctttcaaacatcatgacgagtttatt 46997871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 468 - 517
Target Start/End: Complemental strand, 46980859 - 46980810
Alignment:
Q  468 tggtttccagaaggttatggtccactgatcaatcttccattcaaacatca 517  Q
    ||||||||| |||||||||||||| | ||||| |||||||||||||||||    
T  46980859 tggtttccacaaggttatggtccaattatcaaccttccattcaaacatca 46980810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 530
Target Start/End: Complemental strand, 46995682 - 46995611
Alignment:
Q  459 cacaatcgttggtttccagaaggttatggtccactgatcaatcttccattcaaacatcatgacgagattatt 530  Q
    |||||| | |||||||| ||||| ||||||||| | ||||| ||||| ||||||||||| |||||| |||||    
T  46995682 cacaatagatggtttcctgaaggctatggtccaattatcaaccttcctttcaaacatcacgacgagtttatt 46995611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 517
Target Start/End: Complemental strand, 46974879 - 46974821
Alignment:
Q  459 cacaatcgttggtttccagaaggttatggtccactgatcaatcttccattcaaacatca 517  Q
    |||||| | ||||||||| |||||||||||||  | ||||| |||||||||||||||||    
T  46974879 cacaatagatggtttccacaaggttatggtccgattatcaaccttccattcaaacatca 46974821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 46996114 - 46996030
Alignment:
Q  39 aaactcaaacactccctctctcttgctttattccatttctatcctttatcaggtcgtcttgttacacaaaaatcccaagaccctc 123  Q
    ||||||||||||||||| || ||  |  | ||||||||||||||  | |||||||||||||||||  |||||||| |||| ||||    
T  46996114 aaactcaaacactccctttccctcacacttttccatttctatcccctctcaggtcgtcttgttactaaaaaatccgaagatcctc 46996030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University