View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_high_60 (Length: 243)
Name: NF1169_high_60
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_high_60 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 1887720 - 1887500
Alignment:
| Q |
23 |
agtaacacatcctaaatattatatggctgaattgttgttcatgatctgcagaacatgaacaaacaaacaattcagtcattaatgattgaacaagcacaac |
122 |
Q |
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| T |
1887720 |
agtaacacatcctaaatattatatggctgaattgttgttcatgatctgcagaacatgaacaaacaaacaattcagtcattaatgattgaacaagcacaac |
1887621 |
T |
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| Q |
123 |
atgactgatgtatgacaacatacaaatacaacctatgaatgagtaatgacaaacacaacaaactaaaaaacaggtataaaaagtacaacattgcaactga |
222 |
Q |
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| T |
1887620 |
atgactgatgtatgacaacatacaaatacaacctatgaatgagtaatgacaaacacaacaaactaaaaaacaggtataaaaagtacaacattgcaactga |
1887521 |
T |
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| Q |
223 |
gtgacaaataggaatgaagaa |
243 |
Q |
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|||| |||||||||||||||| |
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| T |
1887520 |
gtgaaaaataggaatgaagaa |
1887500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 1670788 - 1670823
Alignment:
| Q |
183 |
aactaaaaaacaggtataaaaagtacaacattgcaa |
218 |
Q |
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| T |
1670788 |
aactaaaaaacaggtataaaaagtaaaacattgcaa |
1670823 |
T |
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