View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_10 (Length: 516)
Name: NF1169_low_10
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 412
Target Start/End: Original strand, 41936548 - 41936939
Alignment:
| Q |
20 |
gtaccctcctaacaatgctttctcatgctgtacattttatctctttatatgtataaaaatgctttctctgctgttgcaccattttgaatttgtctacacg |
119 |
Q |
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| T |
41936548 |
gtaccctcctaacaatgctttctcatgctgtacattttatctctttatatgtataaaaatgctttctctgctgttgcaccattttgaatttgtctacacg |
41936647 |
T |
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| Q |
120 |
ttgctcagaattgttttttccatggaacaaatagacaatgccagtggtattatgctaattaatagacaagtggattaatgatgtaagggaaggaaattga |
219 |
Q |
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| T |
41936648 |
ttgctcggaatt-ttttttccatggaacaaatagacaatgccagttgtattatgctaattagtagacaagtggattaatgatgtaagggaaggaaattga |
41936746 |
T |
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| Q |
220 |
aaatctggggtgaaggagagagccacaatccggacaaccagtctaactgcagaatccttccccacaaggccacaacaattattggaaaatcttaagttat |
319 |
Q |
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| T |
41936747 |
aaatctggggtgaaggagagagccacaatccagacaaccagtctaactgcagaatccttccccacaaggccacaacaattattagaaaatcttaagttat |
41936846 |
T |
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| Q |
320 |
cgaatcaccatattaactgtagtacacaaactgttaacaacttttggtatttaatgtaatgcatacttttgcaggtagacaatatcctaggcc |
412 |
Q |
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| T |
41936847 |
cgaatcaccatattaactgtagtacacaaactgttaacaacttttggtatttaatgtaatgcatacttttgcaggtagacaatatcctaggcc |
41936939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 136 - 281
Target Start/End: Complemental strand, 23111738 - 23111594
Alignment:
| Q |
136 |
tttccatggaacaaatagacaatgccagtggtattatgctaattaatagacaagtggattaatgatgtaagggaaggaaattgaaaatctggggtgaagg |
235 |
Q |
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| T |
23111738 |
tttccatggaacaaatagatagtgtctgtggtattacgctaattagtagacgagtggattaatggtgtaagggtcggaaattg-aaatcctgggtgaagg |
23111640 |
T |
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| Q |
236 |
agagagccacaatccggacaaccagtctaactgcagaatccttccc |
281 |
Q |
| |
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|||||||||| |||| |||||| ||||||||||||||||| |||| |
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| T |
23111639 |
agagagccacgatccaaacaaccggtctaactgcagaatccgtccc |
23111594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 4304017 - 4303939
Alignment:
| Q |
203 |
taagggaaggaaattgaaaatctggggtgaaggagagagccacaatccggacaaccagtctaactgcagaatccttccc |
281 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
4304017 |
taagggaaggaaattgaaattctggggtgaaggagagagccacaatccatactaccagtctaactgcagaatccttccc |
4303939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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