View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_11 (Length: 505)
Name: NF1169_low_11
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 21 - 325
Target Start/End: Original strand, 29141893 - 29142197
Alignment:
| Q |
21 |
ttggacatggtgacgattgtcgcatgtcttcgtgtttggaagggttaatggtctgtttcaaaatcacggtgtggtagcttcttatgcggctaaccacaaa |
120 |
Q |
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| T |
29141893 |
ttggtcatggtgacgattgtcgcatgtcttcgtgtttggaagggttaatggtctgtttcaaaatcacggcgtggtagcttcttatgcggctaaccacaaa |
29141992 |
T |
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| Q |
121 |
ctactatttctggtttcaccatagccagaaagacagttcaaacataaatccaagagctatagtcatatatgaagaaaattatcaacacgacaaaagaaat |
220 |
Q |
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| T |
29141993 |
ctactatttctggtttcaccatagcaagaaagacaattcaaacataaatccaagagctatagtcatatatgaagaaaatcatcaacacgacaaaagaaat |
29142092 |
T |
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| Q |
221 |
cgattttttcccacgtcatcttttcttctattttgcnnnnnnngtcagaaaacatattttgacaaaataaattggacactgacactgtattagtataccg |
320 |
Q |
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| T |
29142093 |
cgattttttcccacgtcatcttttcttctattttgctttttttgtcagaaaacatattttgacaaaaaaaattggacactgacactgtattagtataccg |
29142192 |
T |
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| Q |
321 |
ttttc |
325 |
Q |
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|||| |
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| T |
29142193 |
gtttc |
29142197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 434
Target Start/End: Original strand, 29142197 - 29142231
Alignment:
| Q |
400 |
caatcatgtaacttcgttactatttgcgaagatat |
434 |
Q |
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| T |
29142197 |
caatcatgtaacttcgttactatttgcgaagatat |
29142231 |
T |
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