View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_13 (Length: 489)
Name: NF1169_low_13
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 85 - 461
Target Start/End: Original strand, 43970339 - 43970712
Alignment:
| Q |
85 |
agagagtgaagtgggtcataggcacacgttttgagcaggcaattccatgtgcccacatggatagagcttaatagtagaacaaacgaatgaagaacaacaa |
184 |
Q |
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| T |
43970339 |
agagagtgaagtgggtcataggcacacgttttgagcaggcaattccatgtgcccacatggatagagcttaatagtagaacaaacgaatgaagaacaacaa |
43970438 |
T |
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| Q |
185 |
gacgacgacnnnnnnnnnnnnnnnnnataatcaataaacatctcaaaacacaatctcaaccccnnnnnnntctcatctttattttcactttctctttttc |
284 |
Q |
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| T |
43970439 |
gacgacgacgacgatgatgatga---ataatcaataaacatctcaaaacacaatctcaaccccaaaaaaatctcatctttattttcactttctctttttc |
43970535 |
T |
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| Q |
285 |
tcaccaaacctataatcaatcatcatccatagattctctcagaagatgaaggaaaccagtgatgggtttgtaagagcagatcagattgatctgaaaagca |
384 |
Q |
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| T |
43970536 |
tcaccaaacccataatcaatcatcatccatagattctctcagaagatgaaggaaaccagtgatgggtttgtaagagcagatcagattgatctgaaaagca |
43970635 |
T |
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| Q |
385 |
tcgatgaacagcttgaaagacatctcaacaaggtgttgactattgacaagaagaagcgcgttgaagaagaagattct |
461 |
Q |
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| T |
43970636 |
tcgatgaacagcttgaaagacatctcaacaaggtgttgactattgacaagaagaagcgcgttgaagaagaagattct |
43970712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 418
Target Start/End: Original strand, 35189309 - 35189383
Alignment:
| Q |
344 |
tgatgggtttgtaagagcagatcagattgatctgaaaagcatcgatgaacagcttgaaagacatctcaacaaggt |
418 |
Q |
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| T |
35189309 |
tgatgggtttgtgagagctgatcaaattgatctaaaaaccattgatgaacaacttgagaaacacttcaacaaggt |
35189383 |
T |
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