View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1169_low_14 (Length: 488)

Name: NF1169_low_14
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1169_low_14
NF1169_low_14
[»] chr5 (18 HSPs)
chr5 (178-479)||(40460269-40460574)
chr5 (154-387)||(2275989-2276225)
chr5 (181-408)||(36681985-36682216)
chr5 (154-228)||(26806523-26806596)
chr5 (116-205)||(26795603-26795691)
chr5 (154-228)||(26795459-26795532)
chr5 (154-216)||(39753499-39753560)
chr5 (116-205)||(26806667-26806755)
chr5 (154-228)||(378297-378370)
chr5 (154-216)||(28594401-28594462)
chr5 (176-216)||(27786289-27786329)
chr5 (177-219)||(3604409-3604451)
chr5 (154-211)||(4240648-4240704)
chr5 (154-211)||(14000301-14000357)
chr5 (154-211)||(4550453-4550509)
chr5 (108-193)||(9689318-9689402)
chr5 (154-211)||(37013868-37013924)
chr5 (155-211)||(40013898-40013953)
[»] chr4 (20 HSPs)
chr4 (82-219)||(20538923-20539060)
chr4 (154-428)||(16653318-16653594)
chr4 (155-407)||(53271974-53272229)
chr4 (154-219)||(28100538-28100602)
chr4 (108-421)||(44646739-44647046)
chr4 (154-305)||(38230836-38230988)
chr4 (154-219)||(41762043-41762108)
chr4 (185-467)||(47301403-47301678)
chr4 (154-216)||(37370846-37370907)
chr4 (152-228)||(1848474-1848549)
chr4 (154-211)||(37828599-37828655)
chr4 (152-219)||(27529141-27529207)
chr4 (170-228)||(53594165-53594223)
chr4 (154-216)||(28847061-28847122)
chr4 (154-211)||(5441357-5441413)
chr4 (154-211)||(30967496-30967552)
chr4 (154-215)||(36094269-36094329)
chr4 (154-211)||(50018204-50018260)
chr4 (154-211)||(54853665-54853721)
chr4 (182-214)||(42314990-42315022)
[»] chr3 (29 HSPs)
chr3 (154-451)||(44041765-44042065)
chr3 (116-410)||(45215162-45215459)
chr3 (116-205)||(10104984-10105072)
chr3 (154-219)||(10225625-10225689)
chr3 (160-227)||(46749321-46749387)
chr3 (154-228)||(10104840-10104913)
chr3 (154-216)||(45926904-45926965)
chr3 (154-213)||(10216002-10216060)
chr3 (154-204)||(10055755-10055804)
chr3 (155-205)||(10225760-10225809)
chr3 (155-237)||(44701609-44701689)
chr3 (154-205)||(10216131-10216181)
chr3 (182-228)||(85841-85887)
chr3 (178-216)||(12103361-12103399)
chr3 (182-228)||(23697096-23697142)
chr3 (182-228)||(23715551-23715597)
chr3 (182-228)||(23734007-23734053)
chr3 (154-211)||(10660488-10660544)
chr3 (354-387)||(12103187-12103220)
chr3 (154-211)||(18749523-18749579)
chr3 (154-211)||(27240440-27240496)
chr3 (354-387)||(34292297-34292330)
chr3 (154-211)||(36674327-36674383)
chr3 (154-211)||(44906710-44906766)
chr3 (154-211)||(50762247-50762303)
chr3 (154-211)||(50903440-50903496)
chr3 (154-211)||(54628796-54628852)
chr3 (182-214)||(23752465-23752497)
chr3 (154-210)||(23753584-23753639)
[»] chr6 (10 HSPs)
chr6 (154-410)||(5957190-5957452)
chr6 (326-410)||(31609454-31609538)
chr6 (159-326)||(10009487-10009653)
chr6 (154-387)||(708979-709214)
chr6 (154-305)||(7100228-7100380)
chr6 (154-305)||(8794250-8794402)
chr6 (160-215)||(4653368-4653422)
chr6 (116-217)||(31609650-31609750)
chr6 (154-211)||(31895649-31895705)
chr6 (154-211)||(34773362-34773418)
[»] scaffold0472 (1 HSPs)
scaffold0472 (154-421)||(1635-1905)
[»] chr8 (18 HSPs)
chr8 (154-387)||(14061610-14061846)
chr8 (155-383)||(39038909-39039140)
chr8 (137-219)||(24317958-24318039)
chr8 (154-211)||(32497437-32497493)
chr8 (154-208)||(32497479-32497532)
chr8 (154-211)||(39467664-39467719)
chr8 (182-228)||(43488997-43489043)
chr8 (154-211)||(7466289-7466345)
chr8 (154-211)||(14782331-14782387)
chr8 (154-219)||(17790500-17790564)
chr8 (154-211)||(18306157-18306213)
chr8 (154-211)||(18958923-18958979)
chr8 (154-211)||(19718077-19718133)
chr8 (154-211)||(26856020-26856076)
chr8 (154-211)||(42366114-42366170)
chr8 (154-211)||(43166844-43166900)
chr8 (154-211)||(44726006-44726062)
chr8 (177-217)||(10127612-10127652)
[»] chr2 (19 HSPs)
chr2 (178-419)||(2085632-2085877)
chr2 (154-410)||(15284287-15284552)
chr2 (154-410)||(18176230-18176489)
chr2 (154-267)||(2288523-2288635)
chr2 (154-298)||(7488005-7488149)
chr2 (154-227)||(37981686-37981758)
chr2 (154-219)||(36598423-36598487)
chr2 (176-234)||(17330796-17330854)
chr2 (182-228)||(35172586-35172632)
chr2 (154-214)||(16146884-16146943)
chr2 (368-410)||(2288641-2288683)
chr2 (154-211)||(215424-215480)
chr2 (154-211)||(7026559-7026615)
chr2 (154-211)||(13833621-13833677)
chr2 (154-219)||(16155474-16155538)
chr2 (177-214)||(21736566-21736603)
chr2 (154-211)||(26788739-26788795)
chr2 (154-211)||(28844510-28844566)
chr2 (154-210)||(3858151-3858206)
[»] chr7 (25 HSPs)
chr7 (154-387)||(41060049-41060286)
chr7 (108-387)||(34115257-34115539)
chr7 (155-305)||(46037218-46037369)
chr7 (108-298)||(42678068-42678260)
chr7 (178-219)||(21067021-21067062)
chr7 (154-323)||(37042413-37042583)
chr7 (182-228)||(33474609-33474655)
chr7 (248-421)||(37649445-37649622)
chr7 (153-211)||(46202513-46202570)
chr7 (154-211)||(39028045-39028101)
chr7 (154-217)||(9599023-9599085)
chr7 (154-217)||(9826594-9826656)
chr7 (182-228)||(12253338-12253384)
chr7 (155-217)||(15913369-15913430)
chr7 (154-212)||(26201525-26201582)
chr7 (154-204)||(37972976-37973026)
chr7 (155-208)||(3634278-3634330)
chr7 (154-211)||(17001219-17001275)
chr7 (154-211)||(18838337-18838393)
chr7 (154-211)||(29614960-29615016)
chr7 (154-211)||(37327875-37327931)
chr7 (154-211)||(39784047-39784103)
chr7 (154-211)||(46405627-46405683)
chr7 (154-211)||(48117789-48117845)
chr7 (115-211)||(33382546-33382641)
[»] chr1 (26 HSPs)
chr1 (331-421)||(51826586-51826676)
chr1 (108-323)||(43553554-43553769)
chr1 (154-237)||(48203412-48203495)
chr1 (154-228)||(27198335-27198408)
chr1 (155-387)||(4288998-4289233)
chr1 (259-432)||(42055238-42055413)
chr1 (154-305)||(48194654-48194806)
chr1 (154-305)||(19007448-19007599)
chr1 (108-228)||(42657732-42657850)
chr1 (154-216)||(52179650-52179711)
chr1 (116-225)||(51826786-51826894)
chr1 (97-216)||(14555270-14555388)
chr1 (331-394)||(19894192-19894255)
chr1 (154-211)||(49230833-49230889)
chr1 (354-422)||(28039174-28039242)
chr1 (154-221)||(14229005-14229071)
chr1 (116-211)||(25612066-25612160)
chr1 (170-217)||(28039365-28039412)
chr1 (154-208)||(48177662-48177715)
chr1 (154-211)||(9322697-9322753)
chr1 (154-211)||(15835250-15835306)
chr1 (154-211)||(18798438-18798494)
chr1 (154-211)||(29219235-29219291)
chr1 (154-211)||(29396585-29396641)
chr1 (154-211)||(51701527-51701583)
chr1 (155-211)||(47784377-47784432)
[»] scaffold0922 (1 HSPs)
scaffold0922 (154-211)||(4154-4210)
[»] scaffold1504 (1 HSPs)
scaffold1504 (154-211)||(817-873)
[»] scaffold0543 (1 HSPs)
scaffold0543 (154-211)||(10514-10570)
[»] scaffold0287 (1 HSPs)
scaffold0287 (155-208)||(11755-11807)
[»] scaffold0110 (1 HSPs)
scaffold0110 (154-211)||(39814-39870)
[»] scaffold0010 (2 HSPs)
scaffold0010 (154-211)||(233691-233747)
scaffold0010 (154-211)||(234539-234595)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 178 - 479
Target Start/End: Complemental strand, 40460574 - 40460269
Alignment:
Q  178 aatataaataaatcttgtggtattcaatcaagacaatcaagattgttttttagggcaacagacttaagtagtattcaattaagatttctccaaacttata 277  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||||| ||||||||||||    
T  40460574 aatataaataaatattgtggtattcaatcaagacaatcaagattgtttttaagggcaacagaattcagtagtattcaaataagatttttccaaacttata 40460475  T
Q  278 aatgtctcttggtattcaaaagtatataagttttaataaattcttt--tgtagtagattttgcaagacttttttgttgaaaatacacataacatgctcat 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  40460474 aatgtctcttggtattcaaaagtatataagttttaataaattcttttgtgtaatagattttgcgagactttttagttgaaaatacacataacatgttcat 40460375  T
Q  376 tcaacaatctcatgaaaaaccttgagactttttgaaactttcataatctttttaacatactcctaacatttcttgtctcgtac--cacacacactcatac 473  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  40460374 tcaacaatctcatgaaaaaccttgaaactttttgagactttcataatctttttaacatactcctaacatttcttgtctcgtaccacacacacactcatac 40460275  T
Q  474 cctttg 479  Q
    ||||||    
T  40460274 cctttg 40460269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 154 - 387
Target Start/End: Complemental strand, 2276225 - 2275989
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt-agggcaacagacttaagtagtatt 252  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||||||| || ||||||| |||| |||||| | ||||||| | ||   | |||||    
T  2276225 gtattcaatcaagactttt-ataaaatgtaaataaatcttgtggtattcaattaaaacaatcatgattttttttttaaggcaacaaaattcgttggtatt 2276127  T
Q  253 caattaagatttctccaaacttataaat-gtctcttggtattcaaaagtatataagttttaataaattcttttgtagta--gattttgcaagactttttt 349  Q
    ||||||| |||||||   |||||| ||| |||| ||| ||||||||||| ||||  |||||||  |||||||||||  |  |||||||  ||| |||||     
T  2276126 caattaaaatttctcatgacttatgaattgtctattgatattcaaaagtctatagattttaatggattcttttgtataatggattttgtgagatttttta 2276027  T
Q  350 gttgaaaatacacataacatgctcattcaacaatctca 387  Q
    ||| ||||||||||| ||||||||||||||||||||||    
T  2276026 gttaaaaatacacatgacatgctcattcaacaatctca 2275989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 181 - 408
Target Start/End: Original strand, 36681985 - 36682216
Alignment:
Q  181 ataaataaatcttgtggtattcaatcaagacaatcaagattgttt-tttagggcaacagacttaagtagtattcaattaagatttctccaaacttataaa 279  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||| |||| ||||||  | |    | ||||||||| ||||||| | | ||| ||||||    
T  36681985 ataaataaatctcatggtattcaatcaagacaatcaagattttttatttaaggcaaccaaatctcatggtattcaatcaagatttgtaccaacctataaa 36682084  T
Q  280 -tgtctcttggtattcaaaagtatataagttttaataaattcttttgta--gtagattttgcaagacttttttgttgaaaatacacataacatgctcatt 376  Q
     ||||| | ||||||||||| ||  ||  |||| ||  |||||||||||  |||||||||   ||||||||| ||||||||||||||| ||||||| |||    
T  36682085 atgtctataggtattcaaaaataggtagattttgatggattcttttgtacggtagattttatgagactttttagttgaaaatacacatgacatgcttatt 36682184  T
Q  377 caacaatctcatgaaaaaccttgagacttttt 408  Q
    |||||||||||  ||||||||||| |||||||    
T  36682185 caacaatctcacaaaaaaccttgaaacttttt 36682216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 26806596 - 26806523
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    ||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||| | ||||||    
T  26806596 gtattcaatcaagactttt-ataaaatataaataaatcttgtagtattcaattaagacaatcaagactttttttt 26806523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 26795691 - 26795603
Alignment:
Q  116 gattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaat 205  Q
    |||||||| ||||  ||| ||||||||| |||||  | ||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  26795691 gattttaaaagacttttttattataaaaaaatcttgtggtattcaatcaagactttt-ataaaatataaataaatcttgtggtattcaat 26795603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 26795532 - 26795459
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    |||||||||||| |||||| | |||||||||||||||||||| ||||||||| ||||||||||||| | ||||||    
T  26795532 gtattcaatcaaaactttt-ataaaatataaataaatcttgtagtattcaattaagacaatcaagactttttttt 26795459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 39753499 - 39753560
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatca 216  Q
    ||||||||||||||||||| | |||||||||| |||||||||| |||||||||||||||||||    
T  39753499 gtattcaatcaagactttt-ataaaatataaaaaaatcttgtgatattcaatcaagacaatca 39753560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 26806755 - 26806667
Alignment:
Q  116 gattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaat 205  Q
    |||||||| ||||  ||| ||||||||| |||||  |  |||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  26806755 gattttaaaagacttttttattataaaaaaatcttgtgatattcaatcaagactttt-ataaaatataaataaatcttgtggtattcaat 26806667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 378297 - 378370
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    ||||||||||||||||| | | ||||| |||||||||||||| |||||||||||| |||||||||| | ||||||    
T  378297 gtattcaatcaagacttct-ataaaatctaaataaatcttgtagtattcaatcaaaacaatcaagactttttttt 378370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 28594462 - 28594401
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatca 216  Q
    |||||||||||||| |||||| |||| ||||||||||||||||||||| ||| ||||||||||    
T  28594462 gtattcaatcaaga-tttttataaaacataaataaatcttgtggtatttaattaagacaatca 28594401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 27786289 - 27786329
Alignment:
Q  176 aaaatataaataaatcttgtggtattcaatcaagacaatca 216  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  27786289 aaaatataaataaatcttgtggtattcaattaagacaatca 27786329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 3604451 - 3604409
Alignment:
Q  177 aaatataaataaatcttgtggtattcaatcaagacaatcaaga 219  Q
    |||| ||||||||||||||||||||||||||||||||| ||||    
T  3604451 aaatctaaataaatcttgtggtattcaatcaagacaattaaga 3604409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 4240704 - 4240648
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| |||||||||||||||||||||||||    
T  4240704 gtattcaatcaagactttttgcaacttaaaaa-aaatcttgtggtattcaatcaagac 4240648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 14000357 - 14000301
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| |||||||||||||||||||||||||    
T  14000357 gtattcaatcaagactttttgcaatttaaaaa-aaatcttgtggtattcaatcaagac 14000301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 4550509 - 4550453
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  4550509 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 4550453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 9689402 - 9689318
Alignment:
Q  108 tttcaaaagattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatctt 193  Q
    |||||| ||||||||| |||   ||| ||||||||| |||||    |||||||||||||| |||||| ||||||||||||||||||    
T  9689402 tttcaagagattttaaaagattttttaattataaaaaaatcttgaggtattcaatcaaga-tttttataaaatataaataaatctt 9689318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 37013868 - 37013924
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  37013868 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 37013924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 40013953 - 40013898
Alignment:
Q  155 tattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    ||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  40013953 tattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 40013898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 20538923 - 20539060
Alignment:
Q  82 agaaattaaggggagttggattgtactttcaaaagattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaata 181  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20538923 agaaattaaggggagttggattgtaatttcaaaagattttaagagacaatttcattataaaagaatctcatggtattcaatcaagactttttacaaaata 20539022  T
Q  182 taaataaatcttgtggtattcaatcaagacaatcaaga 219  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  20539023 taaataaatcttgtggtattcaatcaagacaattaaga 20539060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 154 - 428
Target Start/End: Original strand, 16653318 - 16653594
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt-agggcaacagacttaagtagtatt 252  Q
    |||||||||||||| |||| | |||||||| |||||| |||| ||||||||| ||||||||||||||||||| || | ||||||  | |   ||  ||||    
T  16653318 gtattcaatcaagaatttt-ataaaatatacataaattttgttgtattcaattaagacaatcaagattgtttgttcatggcaacgaaatctggtgatatt 16653416  T
Q  253 caattaagatttctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgt--agtagattttgcaagactttttt 349  Q
    ||| | ||||||| || |||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||||  |||  |||||   |||||||||     
T  16653417 caaatgagatttcccctaacttataaaatgtctcttggtattaaaaagtttataaattttaataaattcttttgtagagtgaattttatgagacttttta 16653516  T
Q  350 gttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttgaaactttcataatcttttt 428  Q
     || |||||| ||||||||| ||||||||||||| |||    ||||||||||||||||||| || |||||||| |||||    
T  16653517 cttaaaaatatacataacatactcattcaacaatgtcacattaaaccttgagactttttgagac-ttcataatattttt 16653594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 155 - 407
Target Start/End: Original strand, 53271974 - 53272229
Alignment:
Q  155 tattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt-agggcaacagacttaagtagtattc 253  Q
    |||||||||||||||||| | | ||||||||||||| |||||||||||||||||||||||||||| | ||| || ||||||||  | |   || ||||||    
T  53271974 tattcaatcaagactttt-atataatataaataaatattgtggtattcaatcaagacaatcaagactttttattcagggcaacgaaatccggtggtattc 53272072  T
Q  254 aattaagatttctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgt--agtagattttgcaagacttttttg 350  Q
    || | ||| ||   |  ||||||||| ||||| |||||||||||||||||| |  |||||||  |||||||| |  ||| |||||||  ||||||||| |    
T  53272073 aaatgagactttggctgacttataaaatgtctattggtattcaaaagtatacatattttaatggattcttttatggagtggattttgtgagactttttag 53272172  T
Q  351 ttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttt 407  Q
     | ||||||||||||||||||| ||||||||||||||  || | |||||||||||||    
T  53272173 ctaaaaatacacataacatgcttattcaacaatctcacaaatatccttgagactttt 53272229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 28100602 - 28100538
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga 219  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||    
T  28100602 gtattcaatcaagactttt-ataaaatataaataaatcttatggtattcaatcaagacaatcaaga 28100538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 108 - 421
Target Start/End: Original strand, 44646739 - 44647046
Alignment:
Q  108 tttcaaaagattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatca 207  Q
    |||||| ||||||||| ||||  ||| || |||||| |||||  | ||||||||||||||||||| | |||| ||||||||||||| |||||||||||||    
T  44646739 tttcaagagattttaaaagactttttaatgataaaaaaatcttgtggtattcaatcaagactttt-ataaaacataaataaatcttatggtattcaatca 44646837  T
Q  208 agacaatcaagattgttttttagggcaacagacttaagtagtattcaattaagatttctccaaacttat-aaatgtctcttggtattcaaaagtatataa 306  Q
    ||||        || || || | | ||||  | |    ||||||||||||||||||| | | ||||| | |||||||| ||||||||||||| | |  |     
T  44646838 agac--------tttttattcaagacaaccaaatcccatagtattcaattaagatttgtaccaacttttaaaatgtctattggtattcaaaaatctgcag 44646929  T
Q  307 gttttaataaattcttttgtag--tagattttgcaagacttttttgttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagact 404  Q
     ||||||| ||||||||| |||  |  |||||  |||||||||| ||| ||||||||||| |||||||||||||| |||||||   |||| ||||| |||    
T  44646930 attttaatgaattcttttatagaatgaattttataagactttttagttaaaaatacacatgacatgctcattcaagaatctcacataaaatcttgaaact 44647029  T
Q  405 ttttgaaactttcataa 421  Q
    |||||| || |||||||    
T  44647030 ttttgagacattcataa 44647046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 305
Target Start/End: Original strand, 38230836 - 38230988
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga-ttgttttttagggcaacagacttaagtagtatt 252  Q
    ||||||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||| || || ||||||| ||||||| | |    | |||||    
T  38230836 gtattcaatcaagactttt-ataaaatttaaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtatt 38230934  T
Q  253 caattaagatttctccaaacttat-aaatgtctcttggtattcaaaagtatata 305  Q
    ||||| |||||||||   |||||| || ||||  ||||||||||||||| ||||    
T  38230935 caattgagatttctcatgacttatgaattgtccattggtattcaaaagtctata 38230988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 41762043 - 41762108
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga 219  Q
    ||||| ||||||||||||||| ||||||||||||| |||||||||||||||  |||||||||||||    
T  41762043 gtattgaatcaagactttttataaaatataaataagtcttgtggtattcaactaagacaatcaaga 41762108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 467
Target Start/End: Original strand, 47301403 - 47301678
Alignment:
Q  185 ataaatcttgtggtattcaatcaagacaatcaagattgttt-tttagggcaacagacttaagtagtattcaattaagatttctccaaacttat-aaatgt 282  Q
    |||||| |||||||||||||| ||||||||||||||||||| || | |||||   | ||  || |||||||| | ||||||  || ||||||| ||||||    
T  47301403 ataaattttgtggtattcaattaagacaatcaagattgtttattcaaggcaatgaaattcggtggtattcaaatgagattttccctaacttataaaatgt 47301502  T
Q  283 ctcttggtattcaaaagtatataagttttaataaa--ttcttttgtagtagattttgcaagacttttttgttgaaaatacacataacatgctcattcaac 380  Q
    || ||| ||| ||||||||| ||  |||||||| |  || ||||| | || ||||||  | ||||||| ||||||||||||||||||||  | | |||||    
T  47301503 ct-ttgatatccaaaagtatgtagattttaatagatttttttttggaataaattttgtgaaactttttagttgaaaatacacataacatatttaatcaac 47301601  T
Q  381 aatctcatgaaaaaccttgagactttttgaaactttcataatctttttaacatactcctaacatttcttgtctcgtaccacacacac 467  Q
    |||||||| ||||| || |||          ||||||||||| |||||| || |||| |||||||||||||||  ||||||||||||    
T  47301602 aatctcataaaaaatctcgag----------actttcataatttttttagcacactcataacatttcttgtcttataccacacacac 47301678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 37370907 - 37370846
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatca 216  Q
    |||||||||||| |||||| | |||||||||||||||||||||||||||||| ||||||||||    
T  37370907 gtattcaatcaaaactttt-ataaaatataaataaatcttgtggtattcaattaagacaatca 37370846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 1848549 - 1848474
Alignment:
Q  152 ttgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    ||||||| ||||||||||||| | |||||||||||||||||||||||||||||| || | |||||||| | ||||||    
T  1848549 ttgtatttaatcaagactttt-ataaaatataaataaatcttgtggtattcaattaaaaaaatcaagactttttttt 1848474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 37828655 - 37828599
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||| || ||| |||||||||||||||||||||||||    
T  37828655 gtattcaatcaagactttttgcaaattaaaaa-aaatcttgtggtattcaatcaagac 37828599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 27529141 - 27529207
Alignment:
Q  152 ttgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga 219  Q
    ||||||||||||| ||||||| |  ||||||||  ||||||||||||||||||| |||||||||||||    
T  27529141 ttgtattcaatcatgactttt-atgaaatataagaaaatcttgtggtattcaattaagacaatcaaga 27529207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 53594165 - 53594223
Alignment:
Q  170 ttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    ||||| |||||||||||||||||||||||||||||| || ||||||  |||| ||||||    
T  53594165 ttttataaaatataaataaatcttgtggtattcaattaaaacaatcgtgattttttttt 53594223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 28847122 - 28847061
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatca 216  Q
    |||||||||||| |||||| |  ||||  ||||||||||||||||||||||| ||||||||||    
T  28847122 gtattcaatcaaaactttt-atgaaatgaaaataaatcttgtggtattcaattaagacaatca 28847061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 5441357 - 5441413
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  5441357 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 5441413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 30967552 - 30967496
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  30967552 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 30967496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 36094329 - 36094269
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatc 215  Q
    |||||||||||||| |||||| |||| |||||||||| || || ||||||||||| ||||||    
T  36094329 gtattcaatcaaga-tttttataaaacataaataaatattatgatattcaatcaatacaatc 36094269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 50018204 - 50018260
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    ||||||||||||||||||||||||  || ||| || |||| |||||||||||||||||    
T  50018204 gtattcaatcaagactttttacaattta-aaaaaagtcttatggtattcaatcaagac 50018260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 54853721 - 54853665
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  54853721 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 54853665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 42314990 - 42315022
Alignment:
Q  182 taaataaatcttgtggtattcaatcaagacaat 214  Q
    |||||||||||||||||||||||| ||||||||    
T  42314990 taaataaatcttgtggtattcaatgaagacaat 42315022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 154 - 451
Target Start/End: Complemental strand, 44042065 - 44041765
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt-agggcaacagacttaagtagtatt 252  Q
    ||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||  | |   || ||||     
T  44042065 gtattcaatcaagactttt-atagaatataaataaatcttgtggtattcaattaagacaatcaagattgtttgttcaaggcaacgaaatctggtggtatc 44041967  T
Q  253 caattaagatttctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgtagta--gattttgcaagactttttt 349  Q
    ||| | ||||||| ||| ||||||||| |||||||||||||| |||||||| ||  |||||||| |||||||||| | |  |||||    |||||||||     
T  44041966 caaatgagatttccccagacttataaaatgtctcttggtattgaaaagtatgtagattttaatagattcttttgtggaatggatttcatgagacttttta 44041867  T
Q  350 gttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttgaaactttcataatctttttaacatactcctaacatttctt 449  Q
    |||||||||||||||||||| ||| |||||||||||||   |||||| ||||||||| ||| ||||||||||| |||||| ||   || |||||||||||    
T  44041866 gttgaaaatacacataacatactctttcaacaatctcaaagaaaaccatgagactttctgagactttcataatttttttagcagggtcgtaacatttctt 44041767  T
Q  450 gt 451  Q
    ||    
T  44041766 gt 44041765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 410
Target Start/End: Complemental strand, 45215459 - 45215162
Alignment:
Q  116 gattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatc 215  Q
    |||||||| ||||  ||| || |||||| |||||  | |||||||||||| |||||| | |||| ||||||||||||  ||||||| |||||||||||||    
T  45215459 gattttaaaagactttttaataataaaaaaatcttgtggtattcaatcaaaactttt-ataaaacataaataaatctcatggtattgaatcaagacaatc 45215361  T
Q  216 aagattgtttttt-agggcaacagacttaagtagtattcaattaagatttctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaa 313  Q
    |||||| ||| || | |||||   | |    | |||||||||| || ||| |   |||||||||| ||||| ||||||||||||| | |  |  ||||||    
T  45215360 aagattttttattcaaggcaatcaattcccatggtattcaattgagttttgtagcaacttataaaatgtctattggtattcaaaaatcttgagattttaa 45215261  T
Q  314 taaattcttttgtag--tagattttgcaagacttttttgttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttga 410  Q
    || ||||  ||||||  | |||||||  ||||||||| ||| ||||||||| | | ||||||||||||||||||||  |||||||||||||||||||||    
T  45215260 tagattcaattgtagagtggattttgtgagactttttagttaaaaatacacctgagatgctcattcaacaatctcacaaaaaaccttgagactttttga 45215162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 10105072 - 10104984
Alignment:
Q  116 gattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaat 205  Q
    |||||||| ||||  ||| ||||||||| |||||  | ||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  10105072 gattttaaaagacttttttattataaaaaaatcttgtggtattcaatcaagactttt-ataaaatataaataaatcttgtggtattcaat 10104984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 10225689 - 10225625
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga 219  Q
    ||||||||||||||||||| | |||||||||||||||||||| ||||||||| |||||||||||||    
T  10225689 gtattcaatcaagactttt-ataaaatataaataaatcttgtagtattcaattaagacaatcaaga 10225625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 46749321 - 46749387
Alignment:
Q  160 aatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgttttt 227  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||| ||||||||||||||| |||||    
T  46749321 aatcaagactttt-ataaaatataaataaatcttatggtattcaattaagacaatcaagatttttttt 46749387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 10104913 - 10104840
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    |||||||||||| |||||| | |||||||||||||||||||| ||||||||| ||||||||||||| | ||||||    
T  10104913 gtattcaatcaaaactttt-ataaaatataaataaatcttgtagtattcaattaagacaatcaagactttttttt 10104840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 45926965 - 45926904
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatca 216  Q
    ||||||||||||||||| | | |||||||||||||||||||||||||||||| ||||||||||    
T  45926965 gtattcaatcaagacttct-ataaaatataaataaatcttgtggtattcaattaagacaatca 45926904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 10216060 - 10216002
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaa 213  Q
    |||||||||||| |||||| | |||||||||||||||||||||||||||||| |||||||    
T  10216060 gtattcaatcaaaactttt-ataaaatataaataaatcttgtggtattcaattaagacaa 10216002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 10055804 - 10055755
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaa 204  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  10055804 gtattcaatcaagactttt-ataaaatataaataaatcttgtggtattcaa 10055755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 10225809 - 10225760
Alignment:
Q  155 tattcaatcaagactttttacaaaatataaataaatcttgtggtattcaat 205  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  10225809 tattcaatcaagactttt-ataaaatataaataaatcttgtggtattcaat 10225760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 44701609 - 44701689
Alignment:
Q  155 tattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgttttttagggcaaca 237  Q
    |||||||||||||||||| | ||||| |||| |||||||||||||||||||||| ||||||| || | ||||||| |||||||    
T  44701609 tattcaatcaagactttt-ataaaatgtaaacaaatcttgtggtattcaatcaaaacaatcatgact-ttttttaaggcaaca 44701689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 10216181 - 10216131
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaat 205  Q
    ||||||||||||||||||| | |||||||||||||||||||| |||||||||    
T  10216181 gtattcaatcaagactttt-ataaaatataaataaatcttgtcgtattcaat 10216131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 85841 - 85887
Alignment:
Q  182 taaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    ||||||||||||||| ||||||||||||||||| |||||| ||||||    
T  85841 taaataaatcttgtgatattcaatcaagacaattaagattttttttt 85887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 12103399 - 12103361
Alignment:
Q  178 aatataaataaatcttgtggtattcaatcaagacaatca 216  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  12103399 aatataaataaatcttgtagtattcaatcaagacaatca 12103361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 23697096 - 23697142
Alignment:
Q  182 taaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    |||||||||| |||||||||||||||||||||| |||| | ||||||    
T  23697096 taaataaatcatgtggtattcaatcaagacaattaagactttttttt 23697142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 23715551 - 23715597
Alignment:
Q  182 taaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    |||||||||| |||||||||||||||||||||| |||| | ||||||    
T  23715551 taaataaatcatgtggtattcaatcaagacaattaagactttttttt 23715597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 23734007 - 23734053
Alignment:
Q  182 taaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    |||||||||| |||||||||||||||||||||| |||| | ||||||    
T  23734007 taaataaatcatgtggtattcaatcaagacaattaagactttttttt 23734053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 10660488 - 10660544
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  10660488 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 10660544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 387
Target Start/End: Complemental strand, 12103220 - 12103187
Alignment:
Q  354 aaaatacacataacatgctcattcaacaatctca 387  Q
    ||||||||||||||||||||||||||| ||||||    
T  12103220 aaaatacacataacatgctcattcaacgatctca 12103187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 18749523 - 18749579
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  18749523 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 18749579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 27240496 - 27240440
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  27240496 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 27240440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 387
Target Start/End: Complemental strand, 34292330 - 34292297
Alignment:
Q  354 aaaatacacataacatgctcattcaacaatctca 387  Q
    ||||||||||||| ||||||||||||||||||||    
T  34292330 aaaatacacataagatgctcattcaacaatctca 34292297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 36674383 - 36674327
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  36674383 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 36674327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 44906766 - 44906710
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  44906766 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 44906710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 50762303 - 50762247
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  50762303 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 50762247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 50903496 - 50903440
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  50903496 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 50903440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 54628796 - 54628852
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  54628796 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 54628852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 23752465 - 23752497
Alignment:
Q  182 taaataaatcttgtggtattcaatcaagacaat 214  Q
    |||||||||| ||||||||||||||||||||||    
T  23752465 taaataaatcatgtggtattcaatcaagacaat 23752497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 23753639 - 23753584
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaaga 210  Q
    |||||||||||||||||||| |||  || ||| || |||||||||||||||||||||    
T  23753639 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaaga 23753584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 154 - 410
Target Start/End: Original strand, 5957190 - 5957452
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga----ttgttttttagggcaacagacttaagtagt 249  Q
    ||||||||||||||||||| | ||||| |||| ||||||||||||||||||| |||||||||| ||    || ||||||| ||||||| | |    | ||    
T  5957190 gtattcaatcaagactttt-ataaaatgtaaacaaatcttgtggtattcaattaagacaatcatgacttttttttttttaaggcaacaaaatccgttggt 5957288  T
Q  250 attcaattaagatttctccaaacttataaat-gtctcttggtattcaaaagtatataagttttaataaattcttttgtagta--gattttgcaagacttt 346  Q
    ||||||||||||||||||   |||||| ||| |||| ||||||||||||||| ||||  |||||||| ||| ||| |||  |  |||||||  |||||||    
T  5957289 attcaattaagatttctcatgacttatgaattgtctattggtattcaaaagtctatagattttaatatattttttcgtataatggattttgtgagacttt 5957388  T
Q  347 tttgttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttga 410  Q
    || ||| ||||||||||| | |||||||||||| |||||||  |||||||||||||||||||||    
T  5957389 ttagttaaaaatacacatgatatgctcattcaataatctcacaaaaaaccttgagactttttga 5957452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 326 - 410
Target Start/End: Complemental strand, 31609538 - 31609454
Alignment:
Q  326 tagtagattttgcaagacttttttgttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttga 410  Q
    |||| |||||||  ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  31609538 tagtggattttgtgagactttttagttgaaaatacacatgacatgctcattcaacaatctcataaaaaaccttgagactttttga 31609454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 326
Target Start/End: Complemental strand, 10009653 - 10009487
Alignment:
Q  159 caatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgttttttagggcaacagacttaagtagtattcaatta 258  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||||  | |   || |||||||  ||    
T  10009653 caatcaaga-tttttatagaatataaataaatcttgtggtattcaatcaagataatcaatattgtttttca-ggcaacgaaatctggtggtattcagata 10009556  T
Q  259 agatttctccaaacttat-aaatgtctcttggtattcaaaagtatataagttttaataaattcttttgt 326  Q
    |||||| ||| ||||||| |||||||| |||||| |||||||||| ||  |||||||| ||||||||||    
T  10009555 agatttttcctaacttataaaatgtcttttggtagtcaaaagtatttagattttaatagattcttttgt 10009487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 387
Target Start/End: Original strand, 708979 - 709214
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgttttttagggcaacagacttaagtagtattc 253  Q
    |||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||| || | ||||||  ||||||| | |    | ||||||    
T  708979 gtattcaatcaaaactttt-ataaaatgtaaataaatcttgtggtattcaatcaagacaatcatgacttttttttgaggcaacaaaatccgttggtattc 709077  T
Q  254 aattaagatttctccaaacttat-aaatgtctcttggtattcaaaagtatataagttttaataaattctt--ttgtagtagattttgcaagacttttttg 350  Q
    |||| | |||||||   |||||| || ||||| ||||||||||||||| ||||  |||| ||  ||||||   |||| | |||||||  ||||||||| |    
T  709078 aattgaaatttctcatgacttatgaattgtctattggtattcaaaagtctatagattttgatggattcttggatgtaatggattttgtgagactttttag 709177  T
Q  351 ttgaaaatacacataacatgctcattcaacaatctca 387  Q
    || |||||| | |||| |  ||||| |||||||||||    
T  709178 ttaaaaatataaataatactctcatccaacaatctca 709214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 305
Target Start/End: Original strand, 7100228 - 7100380
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga-ttgttttttagggcaacagacttaagtagtatt 252  Q
    ||||||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||| || || ||||||| ||||||| | |    | |||||    
T  7100228 gtattcaatcaagactttt-ataaaatctaaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtatt 7100326  T
Q  253 caattaagatttctccaaacttat-aaatgtctcttggtattcaaaagtatata 305  Q
    ||||| |||||||||   |||||| || ||||  ||||||||||||||| ||||    
T  7100327 caattgagatttctcatgacttatgaattgtccattggtattcaaaagtctata 7100380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 305
Target Start/End: Complemental strand, 8794402 - 8794250
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga-ttgttttttagggcaacagacttaagtagtatt 252  Q
    ||||||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||| || || ||||||| ||||||| | |    | |||||    
T  8794402 gtattcaatcaagactttt-ataaaatctaaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtatt 8794304  T
Q  253 caattaagatttctccaaacttat-aaatgtctcttggtattcaaaagtatata 305  Q
    ||||| |||||||||   |||||| || ||||  ||||||||||||||| ||||    
T  8794303 caattgagatttctcatgacttatgaattgtccattggtattcaaaagtctata 8794250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 4653368 - 4653422
Alignment:
Q  160 aatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatc 215  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||| |||||||||    
T  4653368 aatcaagactttt-ataaaatgtaaataaatcttgtggtattcaattaagacaatc 4653422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 31609750 - 31609650
Alignment:
Q  116 gattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatc 215  Q
    |||||||| ||||  ||| ||||||||| |||||  | ||||||||||||||| ||||| | |||||||||||||||  | ||||||| |||||| ||||    
T  31609750 gattttaaaagactttttaattataaaaaaatcttgtggtattcaatcaagac-ttttatagaatataaataaatctcatagtattcagtcaagataatc 31609652  T
Q  216 aa 217  Q
    ||    
T  31609651 aa 31609650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 31895649 - 31895705
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  31895649 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 31895705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 34773362 - 34773418
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  34773362 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 34773418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 154 - 421
Target Start/End: Complemental strand, 1905 - 1635
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt-agggcaacagacttaagtagtatt 252  Q
    ||||||||| |||| ||||||  ||| ||||||||||||| | ||||||||||||||||||||| | | ||| || ||||||||  | |    | |||||    
T  1905 gtattcaattaaga-tttttatgaaacataaataaatcttatagtattcaatcaagacaatcaaaactttttattgagggcaaccaaatcccatggtatt 1807  T
Q  253 caattaagatttctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgtagta--gattttgcaagactttttt 349  Q
    |||||||||||| | | |||||||||| ||||| ||||||||||||| | |  |  |||||||  |||||||||||| |  |||||||  |||||||||     
T  1806 caattaagatttgtaccaacttataaaatgtctattggtattcaaaaatctgcagattttaatggattcttttgtagaatggattttgtgagacttttta 1707  T
Q  350 gttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttgaaactttcataa 421  Q
    ||| ||||||||| | ||||||| ||||||||||||||  |||||||||||||||||||||||| |||||||    
T  1706 gttaaaaatacacttgacatgctaattcaacaatctcacaaaaaaccttgagactttttgaaacattcataa 1635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 154 - 387
Target Start/End: Original strand, 14061610 - 14061846
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga-ttgttttttagggcaacagacttaagtagtatt 252  Q
    |||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||| || || || || |||||  | ||  || |||||    
T  14061610 gtattcaatcaaga-tttttatagaatataaataaatcttgtggtattcaatcaagacaatcaagactttttattcagtgcaacgaaattcggtggtatt 14061708  T
Q  253 caattaagatttctccaaacttat-aaatgtctcttggtattcaaaagtatataagttttaataaattcttttgt--agtagattttgcaagactttttt 349  Q
    ||| | ||| ||   |  |||||| |||||||| |||||||||||||||||| || |||||||  |||||||| |  ||| |||||||  |||||||||     
T  14061709 caaatgagactttggccgacttataaaatgtctgttggtattcaaaagtatacaaattttaatggattcttttatagagtggattttgtgagacttttta 14061808  T
Q  350 gttgaaaatacacataacatgctcattcaacaatctca 387  Q
    | | ||||||||||||||||||| ||||||||||||||    
T  14061809 gctaaaaatacacataacatgcttattcaacaatctca 14061846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 383
Target Start/End: Complemental strand, 39039140 - 39038909
Alignment:
Q  155 tattcaatcaagacttt-ttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgttt-tttagggcaacagacttaagtagtatt 252  Q
    ||||||||||||||||| ||| | |||||||||||||||  ||||||||||||||||||||||||||| ||| || | ||||||  | |    | |||||    
T  39039140 tattcaatcaagactttcttatagaatataaataaatcta-tggtattcaatcaagacaatcaagattttttattcaaggcaaccaaatctcttggtatt 39039042  T
Q  253 caattaagatttctccaaacttataaatgtctcttggtattcaaaagtatataagttttaataaattcttttg--tagtagattttgcaagacttttttg 350  Q
    |||||||||||  | | ||||||||||   || ||||||||||||| | ||||| |||||||  |||||||||  || |  ||||||  ||||||||| |    
T  39039041 caattaagattcgtaccaacttataaa--actattggtattcaaaaatctataaattttaatggattcttttgtataatgaattttgtgagactttttag 39038944  T
Q  351 tt--gaaaatacacataacatgctcattcaacaat 383  Q
    ||   ||||||||||| | ||||||||||||||||    
T  39038943 ttaaaaaaatacacatgaaatgctcattcaacaat 39038909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 24317958 - 24318039
Alignment:
Q  137 tataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga 219  Q
    ||||||| | |||| | ||||||||||||||||||| | | ||||||||| |||||||||||| ||||| ||| |||||||||    
T  24317958 tataaaaaagtctcgtggtattcaatcaagactttt-atataatataaattaatcttgtggtactcaattaaggcaatcaaga 24318039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 32497437 - 32497493
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    ||||||||||||||||||||||||  || ||| || ||||||||||||||||||||||    
T  32497437 gtattcaatcaagactttttacaactta-aaaaaagtcttgtggtattcaatcaagac 32497493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 32497479 - 32497532
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaa 208  Q
    |||||||||||||||||||| |||  || ||| ||||||||||||||||||||||    
T  32497479 gtattcaatcaagactttttgcaacttaaaaa-aaatcttgtggtattcaatcaa 32497532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 39467719 - 39467664
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    ||||||||||||||||||||||  ||  |||| || ||||||||||||||||||||||    
T  39467719 gtattcaatcaagactttttac--aacttaaaaaagtcttgtggtattcaatcaagac 39467664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 43488997 - 43489043
Alignment:
Q  182 taaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    |||||||||||||| |||||||||||||||||| |||| | ||||||    
T  43488997 taaataaatcttgtagtattcaatcaagacaattaagactttttttt 43489043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 7466289 - 7466345
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  7466289 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 7466345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 14782387 - 14782331
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  14782387 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 14782331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 17790500 - 17790564
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga 219  Q
    ||||||||||| ||||||| | |||||||||  ||||||||||||||||||| |||| ||| ||||    
T  17790500 gtattcaatcatgactttt-ataaaatataacaaaatcttgtggtattcaattaagataattaaga 17790564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 18306213 - 18306157
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  18306213 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 18306157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 18958979 - 18958923
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  18958979 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 18958923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 19718133 - 19718077
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  19718133 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 19718077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 26856020 - 26856076
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| |||| ||||||||||||||||||||    
T  26856020 gtattcaatcaagactttttgcaacttaaaaa-aaatattgtggtattcaatcaagac 26856076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 42366114 - 42366170
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||| |||||| | ||||| | |||||||| |||||||||||||||||||    
T  42366114 gtattcaatcaaaactttt-ataaaatctgaataaatcatgtggtattcaatcaagac 42366170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 43166900 - 43166844
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  43166900 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 43166844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 44726062 - 44726006
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  44726062 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 44726006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 10127612 - 10127652
Alignment:
Q  177 aaatataaataaatcttgtggtattcaatcaagacaatcaa 217  Q
    ||||||||  ||||||| |||||||||||||||||||||||    
T  10127612 aaatataacaaaatcttttggtattcaatcaagacaatcaa 10127652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 178 - 419
Target Start/End: Original strand, 2085632 - 2085877
Alignment:
Q  178 aatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt-agggcaac-agacttaagtagtattcaattaagatttctccaaactta 275  Q
    ||||| ||||||||||||| |||||||| ||||||||||| |||||||||| ||  |||| ||| ||| || |||||||| | ||||||  || ||||||    
T  2085632 aatatgaataaatcttgtgatattcaattaagacaatcaaaattgttttttcagaacaacgaga-ttaggtggtattcaaatgagattttccctaactta 2085730  T
Q  276 taaa-tgtctcttggtattcaaaagtatataagttttaataaattctttt--gtagtagattttgcaagacttttttgttgaaaatacacataacatgct 372  Q
    |||| ||||||||| ||||||||||||| ||  |||||||| ||| ||||  | | | |||||||  |||||||||  |||||||||||||| | ||| |    
T  2085731 taaaatgtctcttgatattcaaaagtatgtagattttaatagattattttacggaatggattttgtgagactttttatttgaaaatacacatgatatgtt 2085830  T
Q  373 cattcaacaatctcatgaaaaaccttgagactttttgaaactttcat 419  Q
    || |||||||||||||  ||||||||| |||||||| | ||||||||    
T  2085831 caatcaacaatctcatagaaaaccttgtgactttttaagactttcat 2085877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 410
Target Start/End: Complemental strand, 15284552 - 15284287
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga-----ttgttttttagggcaacagacttaagtag 248  Q
    |||||||| |||||||||| | ||||| |||| ||||||||||||||||||| |||||||||| |      || ||||||| ||||||| | |    | |    
T  15284552 gtattcaaccaagactttt-ataaaatgtaaacaaatcttgtggtattcaattaagacaatcatgtaattttttttttttaaggcaacaaaatccgttgg 15284454  T
Q  249 tattcaattaagatttctccaaacttataaat-gtctcttggtatt-caaaagtatataagttttaataaattcttttgtagta--gattttgcaag-ac 343  Q
    |||||||||||||||||||   |||||| ||| |||| |||||||| ||||||| ||||  |||||||  |||||||||||  |  |||||||  || ||    
T  15284453 tattcaattaagatttctcatgacttatgaattgtctattggtattacaaaagtttatagattttaatggattcttttgtacaatggattttgtgagtac 15284354  T
Q  344 ttttttgttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttga 410  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||    
T  15284353 tttttagttaaaaatacacatgacatgctcattcaacaatctcacaaaaaaccttaagactttttga 15284287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 154 - 410
Target Start/End: Complemental strand, 18176489 - 18176230
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt-agggcaacagacttaagtagtatt 252  Q
    ||||||||||||||||||| | |||| ||||||||||||  ||||||| ||||||||||||||||||| ||| || | |||||   | |    | |||||    
T  18176489 gtattcaatcaagactttt-ataaaacataaataaatctcatggtattgaatcaagacaatcaagattttttattcaaggcaatcaattcccatggtatt 18176391  T
Q  253 caattaagatttctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgtag--tagattttgcaagactttttt 349  Q
    ||||| ||||||    || |||||||| ||||| ||||||||||||| | |  |  |||||||  ||||| ||||||  | |||||||  |||||||||     
T  18176390 caattgagattttataaatcttataaaatgtctattggtattcaaaattcttgagattttaatggattctattgtagagtggattttgtgagacttttta 18176291  T
Q  350 gttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttga 410  Q
    ||| ||||||||||| | ||||||||||||||||||||  |||||||||||||||||||||    
T  18176290 gttaaaaatacacatgatatgctcattcaacaatctcacaaaaaaccttgagactttttga 18176230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 267
Target Start/End: Original strand, 2288523 - 2288635
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgttttttagggcaacagacttaagtagtattc 253  Q
    ||||||||||||||||||| | ||||| |||| ||||||||||||||||||| |||||||||| || | ||||||| ||||||| | |    | ||||||    
T  2288523 gtattcaatcaagactttt-ataaaatgtaaacaaatcttgtggtattcaattaagacaatcatgacttttttttaaggcaacaaaatccgttggtattc 2288621  T
Q  254 aattaagatttctc 267  Q
    ||||||||||||||    
T  2288622 aattaagatttctc 2288635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 298
Target Start/End: Complemental strand, 7488149 - 7488005
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgttttttagggcaacagacttaagtagtattc 253  Q
    ||||| ||||||||||||| |  |||| ||||||||||||||||||||||||||||||||| |||| | ||||||| | || || | ||   | ||||||    
T  7488149 gtattgaatcaagactttt-atgaaatctaaataaatcttgtggtattcaatcaagacaattaagacttttttttaagacatcaaaattcgttggtattc 7488051  T
Q  254 aattaagatttctccaaacttat-aaatgtctcttggtattcaaaa 298  Q
    |||||||||||||   ||||||| ||||||||| ||||||| ||||    
T  7488050 aattaagatttctaagaacttataaaatgtctcgtggtattgaaaa 7488005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 37981686 - 37981758
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgttttt 227  Q
    |||||||||||| |||||| | ||||||||||||||| |||||||||||||| |||||||||| |||| |||||    
T  37981686 gtattcaatcaaaactttt-ataaaatataaataaattttgtggtattcaattaagacaatcatgatttttttt 37981758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 36598487 - 36598423
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga 219  Q
    ||||| ||||||||||||| | ||||| ||||||||| ||||||||||||||||||| ||||||||    
T  36598487 gtatttaatcaagactttt-ataaaatttaaataaatattgtggtattcaatcaagataatcaaga 36598423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 17330854 - 17330796
Alignment:
Q  176 aaaatataaataaatcttgtggtattcaatcaagacaatcaagattgttttttagggca 234  Q
    |||||||||| |||||||| ||||||||||||||||||||| || | ||||||| ||||    
T  17330854 aaaatataaacaaatcttgaggtattcaatcaagacaatcatgacttttttttaaggca 17330796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 35172632 - 35172586
Alignment:
Q  182 taaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    ||||||||||||||||||||||||||||||||| |||| | ||||||    
T  35172632 taaataaatcttgtggtattcaatcaagacaattaagactttttttt 35172586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 16146884 - 16146943
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaat 214  Q
    ||||||||||||||||||| | ||||| || |||||| |||||||||||||| ||||||||    
T  16146884 gtattcaatcaagactttt-ataaaatttatataaattttgtggtattcaattaagacaat 16146943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 2288641 - 2288683
Alignment:
Q  368 atgctcattcaacaatctcatgaaaaaccttgagactttttga 410  Q
    ||||||||||||||||||||  ||||||||||| |||||||||    
T  2288641 atgctcattcaacaatctcacaaaaaaccttgaaactttttga 2288683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 215480 - 215424
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  215480 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 215424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 7026559 - 7026615
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  7026559 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 7026615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 13833677 - 13833621
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  13833677 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 13833621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 16155474 - 16155538
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga 219  Q
    |||||||||||| |||||| | ||||| || |||||| |||||||||||||| |||||||| ||||    
T  16155474 gtattcaatcaaaactttt-ataaaatttatataaattttgtggtattcaattaagacaattaaga 16155538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 21736603 - 21736566
Alignment:
Q  177 aaatataaataaatcttgtggtattcaatcaagacaat 214  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  21736603 aaatctaaataaatcttgttgtattcaatcaagacaat 21736566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 26788739 - 26788795
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  26788739 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 26788795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 28844510 - 28844566
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  28844510 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 28844566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 3858206 - 3858151
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaaga 210  Q
    ||||||||||||||||||| | | |||||||||||||||  || |||||||||||||    
T  3858206 gtattcaatcaagactttt-atagaatataaataaatctcatgatattcaatcaaga 3858151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 154 - 387
Target Start/End: Original strand, 41060049 - 41060286
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt-agggcaacagacttaagtagtatt 252  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||||||||| ||| ||||| || | ||| || ||||||||  | |   || |||||    
T  41060049 gtattcaatcaaga-tttttattaaatataaataaatcttgtggtattcaatccagataatcatgactttttgttcagggcaacgaaatctggtggtatt 41060147  T
Q  253 caattaagatttctccaaacttataaa--tgtctcttggtattcaaaagtatataagttttaataaattcttttgtag--tagattttgcaagacttttt 348  Q
    ||| | ||||||   |  ||||| |||  ||||   |||||||||||||||||||  |||||||| |||||||| |||  | ||||||| ||||||||||    
T  41060148 caaatgagattttgactgacttaaaaaaatgtccggtggtattcaaaagtatatagattttaatagattcttttatagagtggattttgtaagacttttt 41060247  T
Q  349 tgttgaaaatacacataacatgctcattcaacaatctca 387  Q
       | ||||||||||||||||| ||||||||||||||||    
T  41060248 aactaaaaatacacataacatgttcattcaacaatctca 41060286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 387
Target Start/End: Complemental strand, 34115539 - 34115257
Alignment:
Q  108 tttcaaaagattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatca 207  Q
    ||||||| |||||||| ||||  ||| || |||||| |||||  | ||||||||||||||||||| |   |||||||||||||||  ||||||||||| |    
T  34115539 tttcaaatgattttaaaagactttttaatgataaaaaaatcttgtagtattcaatcaagactttt-atggaatataaataaatctcatggtattcaatta 34115441  T
Q  208 agacaatcaagattgtttttt-agggcaacagacttaagtagtattcaattaagatttctccaaacttataaa-tgtctcttggtattcaaaagtatata 305  Q
    |||| |||||  || ||| || | || |||  | |    | ||||||||| ||||||| | | |||||||||| ||| | | ||||||||||| | | ||    
T  34115440 agacgatcaaatttttttattcaaggtaaccaaatctcatggtattcaatcaagatttgtaccaacttataaaatgtttataggtattcaaaaatctgta 34115341  T
Q  306 agttttaataaattcttttgta--gtagattttgcaagacttttttgttgaaaatacacataacatgctcattcaacaatctca 387  Q
      |||||||  |||||||||||  || |||||||  |||||||||  |||||||||||||| ||||||||||||||||||||||    
T  34115340 gattttaatggattcttttgtatagtggattttgtgagactttttaattgaaaatacacatgacatgctcattcaacaatctca 34115257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 305
Target Start/End: Complemental strand, 46037369 - 46037218
Alignment:
Q  155 tattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga-ttgttttttagggcaacagacttaagtagtattc 253  Q
    |||||||||||||||||| | ||||| |||| |||||||||| ||||||||||||||||||| || || ||||||| ||||||| | |    | ||||||    
T  46037369 tattcaatcaagactttt-ataaaatgtaaacaaatcttgtgatattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattc 46037271  T
Q  254 aattaagatttctccaaacttat-aaatgtctcttggtattcaaaagtatata 305  Q
    |||| |||||||||   |||||| || ||||| ||||||||||||||| ||||    
T  46037270 aattgagatttctcatgacttatgaattgtctattggtattcaaaagtctata 46037218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 298
Target Start/End: Complemental strand, 42678260 - 42678068
Alignment:
Q  108 tttcaaaagattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatca 207  Q
    |||||| ||||||||| ||||  ||| || |||||| |||||  |  |||||||| ||||||||| |  ||| ||||||||||||  |||||||||||||    
T  42678260 tttcaagagattttaaaagactttttaatgataaaaaaatctggtgatattcaattaagactttt-atgaaacataaataaatctcatggtattcaatca 42678162  T
Q  208 agacaatcaaga--ttgttttttagggcaacagacttaagtagtattcaattaagatttctccaaacttat-aaatgtctcttggtattcaaaa 298  Q
    ||||||||||||  || || || ||||||||  | ||   | ||||||||||||||||| | | ||||||| |||||||| |||||||||||||    
T  42678161 agacaatcaagacttttttattgagggcaaccaaattccatggtattcaattaagatttgtaccaacttataaaatgtctattggtattcaaaa 42678068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 21067021 - 21067062
Alignment:
Q  178 aatataaataaatcttgtggtattcaatcaagacaatcaaga 219  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21067021 aatataaataaatcttgtggtattcaatcaagacaatcaaga 21067062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 323
Target Start/End: Complemental strand, 37042583 - 37042413
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgttttttagg-gcaacagacttaagtagtatt 252  Q
    |||||||||||||| |||||| ||||| ||||| ||| |||||||||||||| | |||||||||  || |||||||   |||||  | |   ||||||||    
T  37042583 gtattcaatcaaga-tttttataaaatctaaattaattttgtggtattcaattatgacaatcaaattttttttttaaatgcaacgaaatccggtagtatt 37042485  T
Q  253 caattaagatttctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttt 323  Q
    |||||||||||||||  |||||||||| | |||| |||||||||||| || |||  ||| ||| ||||||||    
T  37042484 caattaagatttctcacaacttataaattatctcatggtattcaaaaatacatagatttaaatgaattcttt 37042413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 33474609 - 33474655
Alignment:
Q  182 taaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||    
T  33474609 taaataaatcttgtggtattcaatcaagacaattaagattttttttt 33474655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 421
Target Start/End: Complemental strand, 37649622 - 37649445
Alignment:
Q  248 gtattcaattaagatttctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgtag--tagattttgcaagact 344  Q
    |||||| ||| |||||||| | |||||||||| ||||| ||||||||||||| | |  || ||||||   ||||||||||||  | |||||||  |||||    
T  37649622 gtattcgattgagatttctaccaacttataaaatgtctattggtattcaaaaatcttaaaattttaacggattcttttgtagagtggattttgtgagact 37649523  T
Q  345 tttttgttgaaaatacacataacatgctcattcaacaatctcatgaaaaacct-tgagactttttgaaactttcataa 421  Q
    |||| ||| |||| |||||| | ||||| ||||||||||||||  ||||| ||  |||||||||||| || |||||||    
T  37649522 ttttagttcaaaaaacacatgaaatgctaattcaacaatctcacaaaaaaactaagagactttttgagacattcataa 37649445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 46202570 - 46202513
Alignment:
Q  153 tgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    ||||||||||||||| |||||| | |||| |||||||| ||||||||||||||||||||    
T  46202570 tgtattcaatcaaga-tttttatagaataaaaataaattttgtggtattcaatcaagac 46202513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 39028045 - 39028101
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| |||||||||||||||||||||||||    
T  39028045 gtattcaatcaagactttttgcaacttaaaaa-aaatcttgtggtattcaatcaagac 39028101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 9599085 - 9599023
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaa 217  Q
    |||||||||||||| |||| | ||||| |||||||||||||| ||||||||| |||| ||||||    
T  9599085 gtattcaatcaagaatttt-ataaaatttaaataaatcttgttgtattcaattaagataatcaa 9599023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 9826656 - 9826594
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaa 217  Q
    |||||||||||||| |||| | ||||| |||||||||||||| ||||||||| |||| ||||||    
T  9826656 gtattcaatcaagaatttt-ataaaatttaaataaatcttgttgtattcaattaagataatcaa 9826594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 12253384 - 12253338
Alignment:
Q  182 taaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    |||||||||||| |||||||||||||||||||| |||| | ||||||    
T  12253384 taaataaatcttatggtattcaatcaagacaattaagactttttttt 12253338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 15913430 - 15913369
Alignment:
Q  155 tattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaa 217  Q
    |||||||||||||||||| | | |||||||||||||||  ||| |||||||||||| ||||||    
T  15913430 tattcaatcaagactttt-atagaatataaataaatctcatggcattcaatcaagataatcaa 15913369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 26201582 - 26201525
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagaca 212  Q
    ||||||| ||||||||||| | |||||||||||||||||  ||| ||||||||||||||    
T  26201582 gtattcattcaagactttt-ataaaatataaataaatctcatgggattcaatcaagaca 26201525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 37973026 - 37972976
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaa 204  Q
    ||||||||||||||||||||||||  || ||| |||||| |||||||||||    
T  37973026 gtattcaatcaagactttttacaacttaaaaaaaaatctcgtggtattcaa 37972976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 3634278 - 3634330
Alignment:
Q  155 tattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaa 208  Q
    |||||||||||||||||| | ||||||||| ||||| || ||||||||||||||    
T  3634278 tattcaatcaagactttt-ataaaatataagtaaattttatggtattcaatcaa 3634330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 17001275 - 17001219
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  17001275 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 17001219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 18838337 - 18838393
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| |||| ||||||||||||||||||||    
T  18838337 gtattcaatcaagactttttgcaacttaaaaa-aaatattgtggtattcaatcaagac 18838393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 29615016 - 29614960
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  29615016 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 29614960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 37327875 - 37327931
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  37327875 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 37327931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 39784047 - 39784103
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  39784047 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 39784103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 46405683 - 46405627
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| |||||||| ||||||||||||||||    
T  46405683 gtattcaatcaagactttttgcaacttaaaaa-aaatcttgcggtattcaatcaagac 46405627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 48117845 - 48117789
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  48117845 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 48117789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 33382546 - 33382641
Alignment:
Q  115 agattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    ||||||||| ||||  ||| ||||| ||| | ||| || |||||||||||||||||||| |||  || ||| ||  |||||||||||||||||||||    
T  33382546 agattttaaaagactttttaattatgaaaaagtcttatggtattcaatcaagactttttgcaactta-aaaaaagccttgtggtattcaatcaagac 33382641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 51826676 - 51826586
Alignment:
Q  331 gattttgcaagacttttttgttgaaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttgaaactttcataa 421  Q
    |||||||  ||||||||| ||| ||||||||||| | ||||||||||||||||||||  ||||||||||||||||||||| || |||||||    
T  51826676 gattttgtgagactttttagttaaaaatacacatgaaatgctcattcaacaatctcacaaaaaaccttgagactttttgagacattcataa 51826586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 108 - 323
Target Start/End: Original strand, 43553554 - 43553769
Alignment:
Q  108 tttcaaaagattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatca 207  Q
    |||||| ||||||||| ||||| |||||| |||||| | |||  | |||| |||| ||||||||| | ||||| |||||||||||||| ||||||||| |    
T  43553554 tttcaagagattttaatagacattttcataataaaaaagtcttgtggtatacaattaagactttt-ataaaatttaaataaatcttgttgtattcaatta 43553652  T
Q  208 agacaatcaagattgttttttagggcaacagacttaagtagtattcaattaagatttctccaaacttataaa-tgtctcttggtattcaaaagtatataa 306  Q
     ||||||||||| |   ||| | || || | | |    ||| |||||||| |||||||||  |||||||||| |||||||||||||| |||| || ||||    
T  43553653 cgacaatcaagacttcatttgaaggtaataaaatccgttagcattcaattgagatttctcacaacttataaattgtctcttggtattaaaaaatacataa 43553752  T
Q  307 gttttaataaattcttt 323  Q
     ||||||||||||||||    
T  43553753 attttaataaattcttt 43553769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 48203412 - 48203495
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga-ttgttttttagggcaaca 237  Q
    ||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| || || ||||||| |||||||    
T  48203412 gtattcaatcaagactttt-ataaaatataaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaaca 48203495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 27198335 - 27198408
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgtttttt 228  Q
    |||||||||||| |||||| | |||||||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  27198335 gtattcaatcaaaactttt-ataaaatataaataaatcttgtggtattcaattaagacaatcatgattctttttt 27198408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 387
Target Start/End: Original strand, 4288998 - 4289233
Alignment:
Q  155 tattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga-ttgttttttagggcaacagacttaagtagtattc 253  Q
    |||||||||||||||||| | | |||||||||||||| ||||||||||||||||||||||||||| || || || ||||||||  | ||   | ||||||    
T  4288998 tattcaatcaagactttt-atagaatataaataaatcatgtggtattcaatcaagacaatcaagactttttattcagggcaacgaaattcgatggtattc 4289096  T
Q  254 aattaagatttctccaaacttat-aaatgtctcttggtattcaaaagtatataagttttaataaattcttt--tgtagtagattttgcaagacttttttg 350  Q
    || | ||| ||   |  |||||| |||||| |  ||||||||||||||||| |  |||||||  |||||||  || ||| |||||||  ||| ||||| |    
T  4289097 aaatgagactttggctgacttataaaatgtttgctggtattcaaaagtatacagattttaatggattcttttatggagtggattttgtgagaatttttag 4289196  T
Q  351 ttgaaaatacacataacatgctcattcaacaatctca 387  Q
     | ||||||||||||| ||||| ||||||||||||||    
T  4289197 ctaaaaatacacataagatgcttattcaacaatctca 4289233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 259 - 432
Target Start/End: Original strand, 42055238 - 42055413
Alignment:
Q  259 agatttctccaaacttataaa-tgtctcttggtattcaaaagtatataagttttaataaattcttttgt--agtagattttgcaagacttttttgttgaa 355  Q
    ||||||| || |||||||||| ||||||||  ||||||||  ||| ||  |||||||| |||||||| |  ||| |||||||||| | ||||| ||| ||    
T  42055238 agatttcccctaacttataaaatgtctcttcatattcaaat-tatgtagattttaatagattcttttatggagtggattttgcaaaaatttttagttaaa 42055336  T
Q  356 aatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttgaaactttcataatctttttaaca 432  Q
    ||||||||||| || |||||||||||||||||  ||||||||  ||||||||| ||||||  |||||  ||||||||    
T  42055337 aatacacataaaatactcattcaacaatctcaaaaaaaacctcaagactttttaaaacttctataattattttaaca 42055413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 305
Target Start/End: Original strand, 48194654 - 48194806
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaaga-ttgttttttagggcaacagacttaagtagtatt 252  Q
    ||||||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||| || || ||||||| ||||||| | |    | |||||    
T  48194654 gtattcaatcaagactttt-ataaaatctaaacaaatcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtatt 48194752  T
Q  253 caattaagatttctccaaacttat-aaatgtctcttggtattcaaaagtatata 305  Q
    ||||| |||||||||   |||||| || ||||  ||||||||||||||| ||||    
T  48194753 caattgagatttctcatgacttatgaattgtccattggtattcaaaagtctata 48194806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 305
Target Start/End: Complemental strand, 19007599 - 19007448
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagattgttttttagggcaacagacttaagtagtattc 253  Q
    ||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||||||| || || | ||||||| ||||||| | |    | ||||||    
T  19007599 gtattcaatcaagactttt-ataaaatgtaaacaaatcttgtggtattcaatcaagacaaacatgacttttttttaaggcaacaaaatccgttggtattc 19007501  T
Q  254 aattaagatttctccaaacttat-aaatgtctcttggtattcaaaagtatata 305  Q
    |||| |||||||||   |||||| || ||||| |||||||| |||||| ||||    
T  19007500 aattgagatttctcatgacttatgaattgtctattggtattaaaaagtctata 19007448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 42657732 - 42657850
Alignment:
Q  108 tttcaaaagattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatca 207  Q
    |||||| ||||||||| ||||  ||| ||||||||| | |||  | ||||||||||||||||||  | ||||||||||||| |||||||||||||||| |    
T  42657732 tttcaagagattttaaaagactttttaattataaaaaagtcttgtggtattcaatcaagactttc-ataaaatataaataa-tcttgtggtattcaatta 42657829  T
Q  208 agacaatcaagattgtttttt 228  Q
    |||||||||||| | ||||||    
T  42657830 agacaatcaagactttttttt 42657850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 52179711 - 52179650
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatca 216  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||||||    
T  52179711 gtattcaataaagactttt-ataaaatataaataaatcttgtggtattcaattaagacaatca 52179650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 51826894 - 51826786
Alignment:
Q  116 gattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatc 215  Q
    |||||||| ||||  ||| || |||||| |||||  | ||||||||||||||||||| | |||| ||||||||||||  || |||| |||||||||||||    
T  51826894 gattttaaaagactttttaataataaaaaaatcttgtggtattcaatcaagactttt-ataaaacataaataaatctcatgatattgaatcaagacaatc 51826796  T
Q  216 aagattgttt 225  Q
    |||||| |||    
T  51826795 aagatttttt 51826786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 216
Target Start/End: Complemental strand, 14555388 - 14555270
Alignment:
Q  97 ttggattgtactttcaaaagattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtg 196  Q
    |||||||||| ||| ||| |||||||| ||||  ||| || |||||| | | |  | ||||||||||||||||||| | |||||||||| |||  |||||    
T  14555388 ttggattgtaatttaaaaggattttaaaagacttttttataataaaaaagtttggtggtattcaatcaagactttt-ataaaatataaaaaaaatttgtg 14555290  T
Q  197 gtattcaatcaagacaatca 216  Q
    ||||||||| ||||||||||    
T  14555289 gtattcaattaagacaatca 14555270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 331 - 394
Target Start/End: Original strand, 19894192 - 19894255
Alignment:
Q  331 gattttgcaagacttttttgttgaaaatacacataacatgctcattcaacaatctcatgaaaaa 394  Q
    ||||||| || ||||||| ||||||||||||| | ||||| ||||||||||||| |||||||||    
T  19894192 gattttgtaaaactttttagttgaaaatacacgtgacatgatcattcaacaatcacatgaaaaa 19894255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 49230833 - 49230889
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||| || ||| || ||||||||||||||||||||||    
T  49230833 gtattcaatcaagactttttgcaaattaaaaa-aagtcttgtggtattcaatcaagac 49230889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 28039242 - 28039174
Alignment:
Q  354 aaaatacacataacatgctcattcaacaatctcatgaaaaaccttgagactttttgaaactttcataat 422  Q
    |||||||||||||| | |||||||||||||||||  || |  ||||||||||||||| |||| ||||||    
T  28039242 aaaatacacataacgtactcattcaacaatctcacaaatattcttgagactttttgagacttccataat 28039174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 14229071 - 14229005
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaagatt 221  Q
    ||||||||||||||| ||||| |||||| ||| |||||| |||||||| ||| |||||||||| ||||    
T  14229071 gtattcaatcaagac-ttttataaaatacaaagaaatctcgtggtattgaattaagacaatcatgatt 14229005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 211
Target Start/End: Original strand, 25612066 - 25612160
Alignment:
Q  116 gattttaagagacaatttcattataaaagaatctcattgtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||| ||||  ||| ||||| ||| |||||  | |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  25612066 gattttaaaagactttttaattatgaaaaaatcttgtggtattcaatcaagactttttgcaattta-aaaaaagtcttgtggtattcaatcaagac 25612160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 28039412 - 28039365
Alignment:
Q  170 ttttacaaaatataaataaatcttgtggtattcaatcaagacaatcaa 217  Q
    ||||| |||||||||||||||||| |||| ||||||||| ||||||||    
T  28039412 ttttataaaatataaataaatcttatggtgttcaatcaaaacaatcaa 28039365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 48177715 - 48177662
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaa 208  Q
    |||||||||||||||||||| |||  || ||| ||||||||||||||||||||||    
T  48177715 gtattcaatcaagactttttgcaacttaaaaa-aaatcttgtggtattcaatcaa 48177662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 9322753 - 9322697
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| |||| ||||||||||||||||||||    
T  9322753 gtattcaatcaagactttttgcaatttaaaaaaaaat-ttgtggtattcaatcaagac 9322697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 15835306 - 15835250
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  15835306 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 15835250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 18798438 - 18798494
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  18798438 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 18798494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 29219235 - 29219291
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  29219235 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 29219291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 29396641 - 29396585
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| ||||||| |||||||||||||||||    
T  29396641 gtattcaatcaagactttttgcaatttaaaaa-aaatcttttggtattcaatcaagac 29396585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 51701527 - 51701583
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || |||||  ||||||||||||||||||||||    
T  51701527 gtattcaatcaagactttttgcaatttaaaaatag-tcttgtggtattcaatcaagac 51701583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 47784377 - 47784432
Alignment:
Q  155 tattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    ||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  47784377 tattcaatcaagactttttgcaagttaaaaa-aagtcttgtggtattcaatcaagac 47784432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 4154 - 4210
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||| || ||| || ||||||||||||||||||||||    
T  4154 gtattcaatcaagactttttgcaaattaaaaa-aagtcttgtggtattcaatcaagac 4210  T

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Target: scaffold1504 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 817 - 873
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  817 gtattcaatcaagactttttgcaacttaaaaa-aagtcttgtggtattcaatcaagac 873  T

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Target: scaffold0543 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 10514 - 10570
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  10514 gtattcaatcaagactttttgcaatttaaaaa-aagtcttgtggtattcaatcaagac 10570  T

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Target: scaffold0287 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 11807 - 11755
Alignment:
Q  155 tattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaa 208  Q
    |||||||||||||||||| | ||||||||| ||||| || ||||||||||||||    
T  11807 tattcaatcaagactttt-ataaaatataagtaaattttatggtattcaatcaa 11755  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 39870 - 39814
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    ||||||||||||||||||||||||  || ||| || | ||||||||||||||||||||    
T  39870 gtattcaatcaagactttttacaactta-aaaaaagttttgtggtattcaatcaagac 39814  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 233691 - 233747
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  233691 gtattcaatcaagactttttgcaacttagaaa-aagtcttgtggtattcaatcaagac 233747  T

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Target: scaffold0010; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 234539 - 234595
Alignment:
Q  154 gtattcaatcaagactttttacaaaatataaataaatcttgtggtattcaatcaagac 211  Q
    |||||||||||||||||||| |||  || ||| || ||||||||||||||||||||||    
T  234539 gtattcaatcaagactttttgcaacttagaaa-aagtcttgtggtattcaatcaagac 234595  T

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