View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_17 (Length: 461)
Name: NF1169_low_17
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 16 - 432
Target Start/End: Original strand, 49313688 - 49314107
Alignment:
| Q |
16 |
ataatgaagtttaattaaggnnnnnnnttagcaaatacaccgtcaagaaattttcttaatacattttttcgttgtatttatcaattatctattattatat |
115 |
Q |
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| T |
49313688 |
ataatgaagtttaattaaggaaagaaattagcaaatacaccgtcaaaaaaatttcttgatacattttttcgttgtatttatcaattatctattattatat |
49313787 |
T |
|
| Q |
116 |
tttcgtaattgtatgtatatgaa-gtcataacctttgtttaatctaaaagtatataaagtcataaccttgggcctcaggctctcttttgtaccnnnnnnn |
214 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||||||| |
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| T |
49313788 |
tttcgtaattgtatgtatttgaaagtcataacctttgtttaatctaaaagtaaataaagtcataaccttgagcctcaggccctattttgtaccaaaaaaa |
49313887 |
T |
|
| Q |
215 |
nnnnnnnn--gtcataacctttgttacattgattcttaaaatatctttaaaaacgtgtatataatgaaaaatgattagaggtggcaatccctttaaagtt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
49313888 |
aaaaaaaaaagtcataacctttgttacattgattcttaaaatatctttaaaaacgtgtacataatgaaaagtgattagaggtggcaatccctttaaagtt |
49313987 |
T |
|
| Q |
313 |
ggatattataatgttcattcttatatctgtgttttaataaatgcttgtactcgagctcgcacccttgtggagagccggtccaatgcatttataggtttaa |
412 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
49313988 |
ggatattataatgtccattcttatatctgtgttttaataaatgcttgtactcgagctcgtatccttgtggagagccggtccaatgcatttataggtttaa |
49314087 |
T |
|
| Q |
413 |
agtgaattttgagtttatac |
432 |
Q |
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|||||||||| |||| |||| |
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| T |
49314088 |
agtgaattttaagttaatac |
49314107 |
T |
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