View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1169_low_2 (Length: 708)
Name: NF1169_low_2
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 88 - 697
Target Start/End: Original strand, 32484115 - 32484724
Alignment:
| Q |
88 |
aattacatgattggggagacttccggtggaggcggtgttggcgttgctcaaccgttgaacctaattgccgactctgataccactgttgttgcctcttcgg |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32484115 |
aattacatgattggggagacttccggtggaggcggtgttggcgttgctcaaccgttgaacctaattgccgactctgataccactgttgttgcctcttcgg |
32484214 |
T |
|
| Q |
188 |
gcgcacttgttgatccttcttcgttgtattcggctccgattaatgccttcatgacggctagtggtacgcaattcttccctcgcccaagatcttgaaaaca |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32484215 |
gcgcacttgttgatccttcttcgttgtattcggctccgattaatgccttcatgacggctagtggtacgcaattcttccctcgcccaagatcttgaaaaca |
32484314 |
T |
|
| Q |
288 |
aaattgagaggaaagaggagttattatggggatcatggcgtatatattatcccacatatatacttctcttttaccaaaatttgtgtttcaatcatttgac |
387 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32484315 |
aaattgagaagaaagaggagttattatggggatcatggcgtatatattatcccacatatatacttctcttttaccaaaatttgtgtttcaatcatttgac |
32484414 |
T |
|
| Q |
388 |
catgacattgttgttgtggccaagtagtagaggtaaatttgacacacatattgaagtagtagaacaaaatgagattattatatcaaggatgtttgatttt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32484415 |
catgacattgttgttgtggccaagtagtagaggtaaatttgacacacatattgaagtagtagaacaaaatgagattattatatcaaggatgtttgatttt |
32484514 |
T |
|
| Q |
488 |
tgtgcaaaattatcaatgctttgtccaaaaatactatatttattcttcttctccttgaaaaactagctagccaaagctattgtttctttctatgtgtact |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32484515 |
tgtgcaaaattatcaatgctttgtccaaaaatactatatttattcttcttctccttgaaaaactagctagccaaagctattgtttctttctatgtgtact |
32484614 |
T |
|
| Q |
588 |
ctataatggacttctatggctctattatttaatgtagcttaatataattagtgtagtgtgtgtcttctttttattcattgatgcattattttatggggat |
687 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32484615 |
ctataatggacttctatggctctattattaaatgtagcttaatataattagtgtagtgtgtgtcttctttttattcattgatgcattattttatggggat |
32484714 |
T |
|
| Q |
688 |
tttagttctt |
697 |
Q |
| |
|
|||||||||| |
|
|
| T |
32484715 |
tttagttctt |
32484724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 8103003 - 8103092
Alignment:
| Q |
194 |
ttgttgatccttcttcgttgtattcggctccgattaatgccttcatgacggctagtggtacgcaattcttccctcgcccaagatcttgaa |
283 |
Q |
| |
|
|||||||||||||||| |||||| | ||||| ||||| |||||||| | |||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
8103003 |
ttgttgatccttcttctttgtatccagctccacttaataccttcatgccttctagtggtacgcaattcttcccccacccaagatcttgaa |
8103092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University