View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_20 (Length: 430)
Name: NF1169_low_20
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 421
Target Start/End: Complemental strand, 10026951 - 10026542
Alignment:
| Q |
15 |
tttgttaaccttcttcttcttccatagtcaaggttgaaataagtttgttattgttgaaataaacggattttgattatggttaaaatcacgaaattggtgt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
10026951 |
tttgttaaccttcttcttcttccatagtcaaggttgaaataagtttgttatggttgaaataaacggattttgattatggttaaaatctcaaaattggtgt |
10026852 |
T |
|
| Q |
115 |
agaagaaataaaatccattcgttaaccttcttcttccttataattaattatatattttatcccccaattcttaaacatgtcgtgtagaagaaataaaatc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
10026851 |
ggaagaaataaaatccattcgttaaccttcttcttccttataattaataatatattttaaaccccaattcttaaacatgtagtgtagaagaaataaaatc |
10026752 |
T |
|
| Q |
215 |
acgaaacggagacgtgaaccgcggcacgtagttttgcacaatggttgtaagaacggaaacagtgaaggatatggtcagatccataacatatagaaga--- |
311 |
Q |
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| T |
10026751 |
acgaaacggagacgtgaacggtggcacgtagttttgcacaatggttgtaagaacggaagcagtgaaggatattgtcagatccataacagatagaagagat |
10026652 |
T |
|
| Q |
312 |
ggtgctgaagatatatggaggaagaggaagatatacagatgagagacatgagcgatgaattgagagaaatgacaaaataagaattctagtgctaatcata |
411 |
Q |
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| T |
10026651 |
ggtgctgaagatttgtggaggaagaggtagagatacggatgagagacatcatcgatgaattgagagaaagggcaaaataagaattctagtgctaatcata |
10026552 |
T |
|
| Q |
412 |
atagaataat |
421 |
Q |
| |
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|||| ||||| |
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| T |
10026551 |
ataggataat |
10026542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 45980403 - 45980477
Alignment:
| Q |
357 |
acatgagcgatgaattgagagaaatgacaaaataagaattctagtgctaatcataatagaataa-tctacccacc |
430 |
Q |
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|||||||||||||||||| ||| | | |||| |||||||| ||||||||||||| |||| |||| |||||||||| |
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| T |
45980403 |
acatgagcgatgaattgaaagagagggcaaattaagaattttagtgctaatcatgataggataattctacccacc |
45980477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 7548366 - 7547962
Alignment:
| Q |
18 |
gttaaccttcttcttcttccatagtcaaggttgaaataagtttgttattgttgaaataaacggattttgattatggttaaaatcacgaaattggtgtaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7548366 |
gttaaccttcttcttcttccatagtcaaggttgaaataagtttgttatggttgaaataaacggattttgattatggttaaaatcacgaaattagtgtaga |
7548267 |
T |
|
| Q |
118 |
agaaataaaatccattcgttaaccttcttcttccttataattaattatatattttatcccccaattcttaaacatgtcgtgtagaagaaataaaatcacg |
217 |
Q |
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| T |
7548266 |
a---ataaaatccatttgttaaccttcttcttccttttaattaattatatattttaaccccaaattcttaaacatgtcgtgtagaagaaataaaatcacg |
7548170 |
T |
|
| Q |
218 |
aaacggagacgtgaaccgcggcacgtagttttgcacaatggttgtaagaacggaaacagtgaaggatatggtcagatccataacatatagaaga---ggt |
314 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||| |
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| T |
7548169 |
aaatggagacgtgaacaacggcacgtagttttgcacaatggttgtaagaacgatggcagtgaaggaaatggtcagatccataacagatagaagagatggt |
7548070 |
T |
|
| Q |
315 |
gctgaagatatatggaggaagaggaagatat--acagatgagagacatgagcgatgaattgagagaaatgacaaaataagaattctagtgctaatcataa |
412 |
Q |
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||||||||| ||||||| |||||| ||| || | ||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |
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| T |
7548069 |
gctgaagatttatggagaaagaggtagagattgatgaatgagagacatgagcgatgaattgagagaaagggcaaaat-cgaattctagtgctaatcataa |
7547971 |
T |
|
| Q |
413 |
tagaataat |
421 |
Q |
| |
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||| ||||| |
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| T |
7547970 |
taggataat |
7547962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 27 - 240
Target Start/End: Original strand, 16567356 - 16567569
Alignment:
| Q |
27 |
cttcttcttccatagtcaaggttgaaataagtttgttattgttgaaataaacggattttgattatggttaaaatcacgaaattggtgtagaagaaataaa |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16567356 |
cttcttcttccatagtcaaggttgaaataagtttgttatggttgaaataaacagattttgattatggttaaaatcatgaaattggtgtagaagaaataaa |
16567455 |
T |
|
| Q |
127 |
atccattcgttaaccttcttcttccttataattaattatatattttatcccccaattcttaaacatgtcgtgtagaagaaataaaatcacgaaacggaga |
226 |
Q |
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||||||| || || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
16567456 |
atccatttgtcaatcttcttcttccttataattaattatatattttaacccccaattcttaaacatgtcgtgtaaaagaaataaaatcacaaaacggaga |
16567555 |
T |
|
| Q |
227 |
cgtgaaccgcggca |
240 |
Q |
| |
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||||||| |||||| |
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| T |
16567556 |
cgtgaacggcggca |
16567569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 274 - 421
Target Start/End: Original strand, 16567568 - 16567720
Alignment:
| Q |
274 |
cagtgaaggatatggtcagatccataacatatagaagag---gtgctgaagatatatggaggaagaggaagatataca--gatgagagacatgagcgatg |
368 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| || | |||||||||||||||||||| |
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| T |
16567568 |
cagtgaaggaaatggtcagatccataacatatagaagagatggtgctgaagatttatggaggaagaggtagagatcgatggatgagagacatgagcgatg |
16567667 |
T |
|
| Q |
369 |
aattgagagaaatgacaaaataagaattctagtgctaatcataatagaataat |
421 |
Q |
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|||||||||||| | ||||||||||||||| ||||||||||||||| ||||| |
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| T |
16567668 |
aattgagagaaagggtaaaataagaattctattgctaatcataataggataat |
16567720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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