View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_21 (Length: 418)
Name: NF1169_low_21
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 60 - 418
Target Start/End: Complemental strand, 14546278 - 14545920
Alignment:
| Q |
60 |
agtatgtcatgatttatgaatagaaacaaacttacttcattgaatgtattttctgtataaattttcgtaacagaaactttaacagattaagcatgatacg |
159 |
Q |
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| T |
14546278 |
agtatgtcatgatttatgaatagaaacaaacttacttcattgaatgtattttctgtataaattttcttaacagaaactttaacagattaagcatgatacg |
14546179 |
T |
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| Q |
160 |
tgtctctatgagctggaaagcatacaaaatcaaaactattgtataaagaattaaaagaagaaacaatttgataggaagcaagaaaatttggtcagtgtat |
259 |
Q |
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| T |
14546178 |
tgtctctatgagctggaaagcatacaaaatcaaaactatagtataaagaattaaaagaagaaacaatttgataggaagcaagaaaatttggtcagtgtat |
14546079 |
T |
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| Q |
260 |
tgaatctaggccactgtttgcaatgtcaagttagaaagtccttgttgttcataaaaactgaacattattcacgaggatgaagcagataagctagtaataa |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14546078 |
tgaatctaggccactgtttgcaatgtcaagttagaaagtccttgttgttcataaaaactgaacattattcacgaggatgaagcagataagctagtaataa |
14545979 |
T |
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| Q |
360 |
aacnnnnnnnntattgaaaactatgaagaaatgaagtctgagtagtgatgctaactact |
418 |
Q |
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| T |
14545978 |
aacaaaaaaaatattgaaaactatgaagaaatgaagtctgagtagtgatgctaactact |
14545920 |
T |
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