View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1169_low_22 (Length: 404)
Name: NF1169_low_22
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 299
Target Start/End: Complemental strand, 48697780 - 48697514
Alignment:
| Q |
30 |
ccatttacctctccaattacaccttctttgccttgtaaaggactaagcaatggccttgcttctgatacaagcaaggaaacaagaagaataagagcgatga |
129 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697780 |
ccatttacctctccaattacagcttctttgccttgtaaaggactaagcaatggccttgcttctgatacaagcaaggaaacaagaagaataagagcgatga |
48697681 |
T |
|
| Q |
130 |
atgtgaccgaggaggaattcattcttgtatccatattttgaatgaaaatcaaggcttagttaattagtgatctctcttagaaacgtatcttggtgtttat |
229 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
48697680 |
atgtgaccgagga---attcattcttgtatccatattttgaatgaaaatcaaggcttagttaattagtgatctctcatagaaacgtatcttggtttttat |
48697584 |
T |
|
| Q |
230 |
ttgtatttgtattggaattgataaagtggcatcatagaggttctatttataggtaaattctaaagccatg |
299 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697583 |
ttgtatttgtatttgaattgataaagtggcatcatagaggttctatttataggtaaattctaaagccatg |
48697514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 48701065 - 48700960
Alignment:
| Q |
30 |
ccatttacctctccaattacaccttctttgccttgtaaaggactaagcaatggccttgcttctgatacaagcaaggaaacaagaagaataagagcgatga |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
48701065 |
ccatttacctctccaattacgccttctttgccttgtaatggactaagcaatggccttgcttctgatacaagcaaggaaacaagaagaataagagtgagga |
48700966 |
T |
|
| Q |
130 |
atgtga |
135 |
Q |
| |
|
|||||| |
|
|
| T |
48700965 |
atgtga |
48700960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 48693758 - 48693614
Alignment:
| Q |
36 |
acctctccaattacaccttctttgccttgtaaaggactaagcaatggccttgcttctgatacaagcaaggaaacaagaagaataagagcgatgaatgtga |
135 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
48693758 |
acctctccaatttcaccttctttgctttgtaatggactaagcaatggccttgcttctgatacaagcaaggaaacaagaagaataagagtgaagaatgtga |
48693659 |
T |
|
| Q |
136 |
ccgaggaggaattcattcttgtatccatattttgaatgaaaatcaaggct |
185 |
Q |
| |
|
| ||||| || | |||| ||||| |||||||||||||||||||||| |
|
|
| T |
48693658 |
c---agaggatttgagtcttatatcc--attttgaatgaaaatcaaggct |
48693614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 48687496 - 48687428
Alignment:
| Q |
30 |
ccatttacctctccaattacaccttctttgccttgtaaaggactaagcaatggccttgcttctgataca |
98 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| |||||||||||| |
|
|
| T |
48687496 |
ccatttacctctccaattacaccttctctgccttgtagtggactaagaaatggcctagcttctgataca |
48687428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 48680936 - 48680868
Alignment:
| Q |
30 |
ccatttacctctccaattacaccttctttgccttgtaaaggactaagcaatggccttgcttctgataca |
98 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| | ||||||| || |||||||||||| |
|
|
| T |
48680936 |
ccatttacctctccaattacaccttctttcccttgtaaaggattgagcaatgatctagcttctgataca |
48680868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 48687283 - 48687222
Alignment:
| Q |
246 |
attgataaagtggcatcatagaggttctatttataggtaaattctaaagccatgtgacacta |
307 |
Q |
| |
|
|||||| ||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
48687283 |
attgatgaagtggcattatagatgttccatttataggtaaattctaaaaccatgtgacacta |
48687222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University