View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_23 (Length: 403)
Name: NF1169_low_23
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_23 |
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| [»] scaffold1964 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 20529064 - 20528793
Alignment:
| Q |
9 |
agcataggaatataaaggtgtgggaagatgttaaagaaacttgtacaatagtggttgaaagagctcggtctttggttgaagattggcaacttgtgaatgg |
108 |
Q |
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| T |
20529064 |
agcataggaatataaaggtgtgggaagatgttaaagaaacttgtgcaacagtggttgaaagagctcggtctttggttgaagattggcaacttgtgaatag |
20528965 |
T |
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| Q |
109 |
ctctggtgctgaaaccttgaatgcggctactgttgtcatgcaaccagcatctgttagcattgctgcctctgttacaccagctgctgttctatctgctata |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||||| |
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| T |
20528964 |
ctctggtgctgaaaccttgaatgcggctactgttgtcatgcaaccagcatctgttagcgttgatgcctctattacaccagctgctgttctgtctgctata |
20528865 |
T |
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| Q |
209 |
caaccagcaattgttagcgctgttgcctcagctacaccagttgttgtcccgtctgctatataaccaatatct |
280 |
Q |
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| T |
20528864 |
caaccagcaattgttagcgctgctgcctctgctacaccagttgttgtcccgtctgctatataaccaatatct |
20528793 |
T |
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Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 12371515 - 12371361
Alignment:
| Q |
11 |
cataggaatataaaggtgtgggaagatgttaaagaaacttgtacaatagtggttgaaagagctcggtctttggttgaagattggcaacttgtgaatggct |
110 |
Q |
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| T |
12371515 |
cataggaatataaaggtgtgggaagatgttacggaaacttgtgcaacagtggttgaaagagctcggtctttggttgaagattggcaacttgtgaatagct |
12371416 |
T |
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| Q |
111 |
ctggtgctgaaaccttgaatgcggctactgttgtcatgcaaccagcatctgttag |
165 |
Q |
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| T |
12371415 |
ccggtgctgaaaacatgaatgtggctaatgctgtcatgcaaccagcagctgttag |
12371361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 26682489 - 26682668
Alignment:
| Q |
11 |
cataggaatataaaggtgtgggaagatgttaaagaaacttgtacaatagtggttgaaagagctcggtctttggttgaagattggcaacttgtgaatggct |
110 |
Q |
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| T |
26682489 |
cataggaatataaaggtgtaggaagatgttatggaaacttgcgcaacagtggttgaaagagtctggtctttggttgaagattggcaacttgcgaatagct |
26682588 |
T |
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| Q |
111 |
ctggtgctgaaaccttgaatgcggctactgttgtcatgcaaccagcatctgttagcattgctgcctctgttacaccagct |
190 |
Q |
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| T |
26682589 |
ccagtgctgaaaacttgaatgcggctactgctgtcatgcaaccagcagttgttagtgctgctatatctgttacaccagct |
26682668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 2974243 - 2974151
Alignment:
| Q |
9 |
agcataggaatataaaggtgtgggaagatgttaaagaaacttgtacaatagtggttgaaagagctcggtctttggttgaagattggcaacttg |
101 |
Q |
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| T |
2974243 |
agcataggaacttaaaggtgtgggaagacgtcacagaaacttgtgcaatagtggtggaaagagcgcggtccttgattgacgactggcatcttg |
2974151 |
T |
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Target: scaffold1964 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1964
Description:
Target: scaffold1964; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 482 - 574
Alignment:
| Q |
9 |
agcataggaatataaaggtgtgggaagatgttaaagaaacttgtacaatagtggttgaaagagctcggtctttggttgaagattggcaacttg |
101 |
Q |
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|||||||||| ||||||||||| |||| || | |||||||| |||||||||| |||||||| |||| ||| |||| |||||||| |||| |
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| T |
482 |
agcataggaacttaaaggtgtggcaagacgtcacggaaacttgagcaatagtggtggaaagagcgtggtccttgattgacgattggcatcttg |
574 |
T |
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