View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_24 (Length: 401)
Name: NF1169_low_24
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 21 - 394
Target Start/End: Complemental strand, 12507890 - 12507513
Alignment:
| Q |
21 |
acatttctatat--gtttatttattgaagtgctctctcacatggtctctcatcttttggaagttgacacactccatgttgacttcatgagactgtagttg |
118 |
Q |
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| T |
12507890 |
acatttctatataagtttatttattgaagtgctctctcacatggtccctcatcttttggaagttgacacactccatgctgactgcatgagactgtagttg |
12507791 |
T |
|
| Q |
119 |
gtttttgttctctctttttatttttccattgcaccaaacnnnnnnncaatgaaatatatcaaagttttattctcatacaaaattaattaatttttgttta |
218 |
Q |
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| T |
12507790 |
gtttttgttttctctttttatttttccattgcaccaaacaaaaaaacaatgaaatatatcaaagttttattttcatacaaaattaattaatttttgttta |
12507691 |
T |
|
| Q |
219 |
tcaaatatagtttagtgattagaatattacactttttaaatgtaaatatttagagagtcgcgagtttaaaccaatacatttataaaaagatgtccatcaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
12507690 |
tcaaatatagtttagtgattagaatattacactttttaaatgtaaatatttagagagtcacgagtttaaaccaatacatttataaatagatgtccatcaa |
12507591 |
T |
|
| Q |
319 |
gtaaactatgctcatataccaactactttttctttatttgtgtataatgtgtaa--tgccaaagtaacatattattgg |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
12507590 |
gtaaactatgctcatataccaactactttttctttatttgtgtataatgtgtaatgtgccaaagtaacatatttttgg |
12507513 |
T |
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