View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1169_low_25 (Length: 394)

Name: NF1169_low_25
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1169_low_25
NF1169_low_25
[»] chr1 (1 HSPs)
chr1 (1-299)||(49751731-49752026)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 49751731 - 49752026
Alignment:
Q  1 gaactcatcggaatgtgataccgaaatttgtacctcgaccggtgggtccgattgtggttgcagtggattcaactgcactgaaggtaagtcccagagatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49751731 gaactcatcggaatgtgataccgaaatttgtacctcgaccggtgggtccgattgtggttgcagtggattcaactgcactgaaggtaagtcccagagatca 49751830  T
Q  101 gaatcgaggaaagaatcgtattcttcgtcgttgaatttgggaggacgtgattgcttaatgaggagaaactcgttttggtttgaaggattttggatgatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49751831 gaatcgaggaaagaatcgtattcttcgtcgttgaatttgggaggacgtgattgcttaatgaggagaaactcgttttggtttgaaggattttggatgatca 49751930  T
Q  201 aagcgagtttgtgagttgccattgtccaagaattggaaaacggtagttgagcgacaagtttttattaacaacaagtacaaccaactcaacttctattac 299  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||||    
T  49751931 aagcgagtttgtgagttgccattgtccaagaactggaaaacggtagttgagcgacaagttt---ttaataacaagtacaaccaactcaacttctattac 49752026  T

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