View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1169_low_28 (Length: 388)
Name: NF1169_low_28
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 30980995 - 30980800
Alignment:
| Q |
15 |
tatcgacgaaaattaaccacaattgaatagatcgaacaagttcaaattgacgtaacataaaacttattatctggatagagagcaacaagagttcgcacac |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30980995 |
tatcgacgaaaattaaccgcaattgaatagatcgaacaagttcaaattgacgtaacataaaacttattatctggatagagagcaacaagagttcgcacac |
30980896 |
T |
|
| Q |
115 |
catctaaataaaagtcggcacatcgcttaattgacaccaacaggttaaatcttcatgcacttgacgactcgatattaataacaaaaaagtgtgctt |
210 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30980895 |
catctaaacaaaagtcggcacatcgcttaattgacaccaacaggttaaatcttcatgcacttgacgactcgatattaataacaaaaaagtgtgctt |
30980800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 238 - 359
Target Start/End: Complemental strand, 30980760 - 30980639
Alignment:
| Q |
238 |
aaagagtgtgcaatatacactattagcaagaatagtcatcaattttggtcgataatccaactttttctacaaatattgtcactaattttaaatagtaaca |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30980760 |
aaagagtgtgcaatatacactattagcaagaattgtcatcaattttggtcgataatccaactttttctacaaatattgtcactaattttaaatagtaaca |
30980661 |
T |
|
| Q |
338 |
aaaggaagacaaatataataat |
359 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
30980660 |
aaaggaagaaaaatataataat |
30980639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 27765758 - 27765809
Alignment:
| Q |
32 |
cacaattgaatagatcgaacaagttcaaattgacgtaacataaaacttatta |
83 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
27765758 |
cacaattgaacagatcgagcaagttcaaattgacgtaacataaaacctatta |
27765809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 4549067 - 4549116
Alignment:
| Q |
34 |
caattgaatagatcgaacaagttcaaattgacgtaacataaaacttatta |
83 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
4549067 |
caattgaacagatcgagcaagttcaaattgacgtaacataaaacctatta |
4549116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 24651323 - 24651274
Alignment:
| Q |
34 |
caattgaatagatcgaacaagttcaaattgacgtaacataaaacttatta |
83 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
24651323 |
caattgaacagatcgagcaagttcaaattgacgtaacataaaacctatta |
24651274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 11112790 - 11112839
Alignment:
| Q |
34 |
caattgaatagatcgaacaagttcaaattgacgtaacataaaacttatta |
83 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||| ||||||| ||||| |
|
|
| T |
11112790 |
caattgaacagatcgaacaagtttaaattgacataatataaaacgtatta |
11112839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University