View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_29 (Length: 383)
Name: NF1169_low_29
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 80 - 286
Target Start/End: Complemental strand, 22182837 - 22182630
Alignment:
| Q |
80 |
agcataggaacctagatagtcccagccaaacactaagttccgcaaaacaaaagtgacacccataacgccctaacccaacacggttagcctatcacaccca |
179 |
Q |
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| T |
22182837 |
agcacaggaacctagatagtcccagccaaacactaagttccgcaaaacaaaagtgacacccataacgcgctaacccaacacggttagcctatcacaccca |
22182738 |
T |
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| Q |
180 |
aaacacatccctcatagaaaaatgatttagctaaactatccattgaattccaacaccattcataaaataaacaaata-aaattttttatcctattcatac |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
22182737 |
aaacacatccctcatagaaaaatgatttagctaaactatccattgaattccaacaccattcataaaataaacaaatataaaatttttatcctattcatac |
22182638 |
T |
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| Q |
279 |
taagaaac |
286 |
Q |
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|||||||| |
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| T |
22182637 |
taagaaac |
22182630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 112 - 286
Target Start/End: Complemental strand, 22165585 - 22165409
Alignment:
| Q |
112 |
ctaagttccgcaaaacaaaagtgacacccataac--gccctaacccaacacggttagcctatcacacccaaaacacatccctcatagaaaaatgatttag |
209 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||| || ||||||||| ||| |
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| T |
22165585 |
ctaagttccgcaaaacaaaagtgacacccataacaagccctaaccaaacacggttcgcctatcacacccaaaacacaacccctatcaaaaaatgatctag |
22165486 |
T |
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| Q |
210 |
ctaaactatccattgaattccaacaccattcataaaataaacaaataaaattttttatcctattcatactaagaaac |
286 |
Q |
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|||||||||||||| |||||||||||| ||||| |||||||||||| | |||| | ||||||||||||||||||| |
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| T |
22165485 |
ttaaactatccattggattccaacaccagtcatagaataaacaaatatgaattttcaacctattcatactaagaaac |
22165409 |
T |
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