View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_34 (Length: 370)
Name: NF1169_low_34
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_34 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 13227707 - 13228046
Alignment:
| Q |
13 |
aatatggctttcaaattaagttccgaattagtggatgctgccaaagggagtggcgatgccatacgcaaaaagcaagagactcatagaatggcagaggcaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13227707 |
aatatggctttcaaattaagttccgaattagtggatgctgccaaagggagtggcgatgccatacgcaaaaagcaagagactcatagaatggcagaggcaa |
13227806 |
T |
|
| Q |
113 |
atagagcttctgcacattttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataattggaaaagaatca |
212 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13227807 |
atagagcttttgcacattttcgttaatccatgagcagggtctatatacacacatagacctatgtatggatccatacataattataattggaaaagaatca |
13227906 |
T |
|
| Q |
213 |
atagaaaaagaatcggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagcacttttggggacttgcttaagaata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
13227907 |
atagaaaaagaatcggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaaggactttttgggacttgcttaagaata |
13228006 |
T |
|
| Q |
313 |
aatataaataacgaggaatttttggtatattcttggagat |
352 |
Q |
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||||||||||||||||||| |||||||| || |||||||| |
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| T |
13228007 |
aatataaataacgaggaatgtttggtatttttttggagat |
13228046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 53883875 - 53883670
Alignment:
| Q |
13 |
aatatggctttcaaattaagttccgaattagtggatgctgccaaagggagtggcgatgccatacgcaaaaagcaagagactcatagaatggcagaggcaa |
112 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
53883875 |
aatatggctttcaaattatgttccgaattagtgaatgctgccaaagggagtggctatgccatacacaaaaaggaagagactcatagaatggcagaggcaa |
53883776 |
T |
|
| Q |
113 |
atagagcttctgcacattttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataattggaaaagaatca |
212 |
Q |
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||||| ||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
53883775 |
atagatcttttgcacattttcattaatcaatgagcaggatctatacacacacatagacctatgtatggatccatcc------ataattggaaaagaatca |
53883682 |
T |
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| Q |
213 |
atagaaaaagaa |
224 |
Q |
| |
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|||||||||||| |
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| T |
53883681 |
atagaaaaagaa |
53883670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 42680039 - 42680336
Alignment:
| Q |
13 |
aatatggctttcaaattaagttccgaattagtggatgctgccaaagggagtggcgatgccatacgcaaaaagcaagagactcatagaatggcagaggcaa |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||| |||||||||||| |||| |
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| T |
42680039 |
aatatggctctcaaattaagttccgaattagtggatgctgctaaagggagtgacgatgccatacacaaaaaggaagagactcgtagaatggcagaagcaa |
42680138 |
T |
|
| Q |
113 |
atagagcttctgcacattttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataattggaaaagaatca |
212 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42680139 |
atagagcttttgcacattttcgttaatccatgagtaggatctatatacacacgtagacctatgtatggatccatac------ataattggaaaagaatca |
42680232 |
T |
|
| Q |
213 |
atagaaaaagaatcggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagcacttttggggacttgcttaagaata |
312 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42680233 |
atagaaaaagaatcggaattaatcgatatatctatggaaacgaaagacaaaatagaaatgatggctcaactaagcacttttggggacttgcttaagaata |
42680332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 128 - 353
Target Start/End: Original strand, 47522608 - 47522833
Alignment:
| Q |
128 |
attttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataattggaaaagaatcaatagaaaaagaatcg |
227 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47522608 |
attttcgttaatccatgagtaggatctatgtacacacatagacctatgtatggatccatacataattataattggaaaagaatcgatagaaaaagaatcg |
47522707 |
T |
|
| Q |
228 |
gaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagcacttttggggacttgcttaagaataaatataaataacgag |
327 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
47522708 |
gaattaatcgatatatttatcgaaacgaaagacgaaatagaaatgatggctcaactaaacacttttggggacttgcttaagaataaatataaataaccag |
47522807 |
T |
|
| Q |
328 |
gaatttttggtatattcttggagatg |
353 |
Q |
| |
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|||| |||||||| || ||||||||| |
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| T |
47522808 |
gaatgtttggtatttttttggagatg |
47522833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 191920 - 192063
Alignment:
| Q |
13 |
aatatggctttcaaattaagttccgaattagtggatgctgccaaagggagtggcgatgccatacgcaaaaagcaagagactcatagaatggcagaggcaa |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
191920 |
aatatggctttcaaattaagttccgaattagtagatgctgccaaagggagtgggggtgccatacgcaaaaaggaagcgactcatagaatggcagaggcaa |
192019 |
T |
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| Q |
113 |
atagagcttctgcacattttcgttaatccatgagcaggatctat |
156 |
Q |
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|||||||| ||||||||||||||||||||||| ||| |||||| |
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| T |
192020 |
atagagctcttgcacattttcgttaatccatgaacagaatctat |
192063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 316
Target Start/End: Complemental strand, 35934768 - 35934647
Alignment:
| Q |
195 |
ataattggaaaagaatcaatagaaaaagaatcggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagc-actttt |
293 |
Q |
| |
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||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||| |||||||| |||||| | |||||| |
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|
| T |
35934768 |
ataattggaaaagaatcaatagaaaaataatcataattaatagatatatctatcgaaacgaaagac-aaatagaattgatggcttaactaaccaactttt |
35934670 |
T |
|
| Q |
294 |
ggggacttgcttaagaataaata |
316 |
Q |
| |
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| ||||||||||||||||||||| |
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| T |
35934669 |
gaggacttgcttaagaataaata |
35934647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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