View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1169_low_4 (Length: 580)
Name: NF1169_low_4
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 98 - 575
Target Start/End: Complemental strand, 28749475 - 28748998
Alignment:
| Q |
98 |
ctgatctcaaacaaagcagcttacatggtcttcaaggttacaaagtaagtttgtctttctagatttcaattttctatttatttaaattgtaggcgaaaac |
197 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
28749475 |
ctgatctcaaacatagcagcttacatggtcttcaaggttacaaagtaagtttgtctttcttgatttcgattttctatttatttaacttgtaggcgaaaac |
28749376 |
T |
|
| Q |
198 |
ctacatttttgacaatactccactttttgtaagtatactttggaattggtatagaataataggagtttctcaatggatatcaacttaaaacacacttaat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||| | |
|
|
| T |
28749375 |
ctacatttttgacaatactccactttttgtaagtatactttggaattggtatagaaaaatagtagtttctcaatggatatcaacttaaaagacagttact |
28749276 |
T |
|
| Q |
298 |
tggattgaaacaagtacaaaacttgaatttggacatactagatctttttcaatgtgtgactggttgataatgtattcttttggtagttttctaattgtat |
397 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28749275 |
tggattgaaacaagtacaaaactggaatttggacatactagatctttttcaatgtgtgactggttgataatgtattcttttggtagttttctaattgtat |
28749176 |
T |
|
| Q |
398 |
tctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttgtgaaagttcttggcacaactcttttaggtttgaaa |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28749175 |
tctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttgtgaaagttcttggcacaactcttttaggtttgaaa |
28749076 |
T |
|
| Q |
498 |
aaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcctctcccacctacaatattattcgac |
575 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |
|
|
| T |
28749075 |
aaacaatggaagaaaaaagatataagagcacaacctgatgatccaaatgctcctttcccacctacaatttcattcgac |
28748998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 98 - 575
Target Start/End: Complemental strand, 28753488 - 28753011
Alignment:
| Q |
98 |
ctgatctcaaacaaagcagcttacatggtcttcaaggttacaaagtaagtttgtctttctagatttcaattttctatttatttaaattgtaggcgaaaac |
197 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
28753488 |
ctgatctcaaacatagcagcttacatggtcttcaaggttacaaagtaagtttgtctttcttgatttcgattttctatttatttaacttgtaggcgaaaac |
28753389 |
T |
|
| Q |
198 |
ctacatttttgacaatactccactttttgtaagtatactttggaattggtatagaataataggagtttctcaatggatatcaacttaaaacacacttaat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||| | |
|
|
| T |
28753388 |
ctacatttttgacaatactccactttttgtaagtatactttggaattggtatagaaaaatagtagtttctcaatggatatcaacttaaaagacagttact |
28753289 |
T |
|
| Q |
298 |
tggattgaaacaagtacaaaacttgaatttggacatactagatctttttcaatgtgtgactggttgataatgtattcttttggtagttttctaattgtat |
397 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28753288 |
tggattgaaacaagtacaaaactggaatttggacatactagatctttttcaatgtgtgactggttgataatgtattcttttggtagttttctaattgtat |
28753189 |
T |
|
| Q |
398 |
tctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttgtgaaagttcttggcacaactcttttaggtttgaaa |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28753188 |
tctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttgtgaaagttcttggcacaactcttttaggtttgaaa |
28753089 |
T |
|
| Q |
498 |
aaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcctctcccacctacaatattattcgac |
575 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |
|
|
| T |
28753088 |
aaacaatggaagaaaaaagatataagagcacaacctgatgatccaaatgctcctttcccacctacaatttcattcgac |
28753011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 114 - 563
Target Start/End: Complemental strand, 28739517 - 28739059
Alignment:
| Q |
114 |
cagcttacatggtcttcaaggttacaaagtaagtttgtctttctagatttcaattttctatttatttaaattgtaggcgaaaacctacatttttgaca-a |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||| ||| |||| |||||||||||| | | |
|
|
| T |
28739517 |
cagcttacatggtcttcaaggttacaaagtaagtt-gtctttctgtatttctattttttatttatttaaattgttggcaaaaatctacatttttgataca |
28739419 |
T |
|
| Q |
213 |
tactccactttttgtaagtatactttggaattggtatagaataataggagtttctcaatggatatcaacttaaaacacacttaattggattgaaacaagt |
312 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||| ||| ||| ||||| ||||||| | ||||||||||||| ||| ||| |||||||||||||| ||||| |
|
|
| T |
28739418 |
tactcca-tttttgtaagtatattttgaaattgatatggaaaaatagtagtttcttattggatatcaactttaaatacagttaattggattgaagcaagt |
28739320 |
T |
|
| Q |
313 |
acaaaacttgaatttggacatact----------agatctttttcaatgtgtgactggttgataatgtattcttttggtagttttctaattgtattcttt |
402 |
Q |
| |
|
|||||| |||| |||||||| | || || ||||||||||| ||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
28739319 |
gaaaaactggaatatggacatattctgatgcaaaaggtcattttcaatgtgactacggttgataatgtatttctttggtcttttcctaattgtattcttt |
28739220 |
T |
|
| Q |
403 |
ttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttgtgaaagttcttggcacaactcttttaggtttgaaaaaaca |
502 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || | || || |
|
|
| T |
28739219 |
ttaaatcacaggttttcatatccatagcaatgatccttggtgatggtctatacaactttgtgaaagttcttagcacaactcttataggtatgtacaagca |
28739120 |
T |
|
| Q |
503 |
atggaagaaaaaagacataagagcacaacctgatgatccaaatgctcctctcccacctaca |
563 |
Q |
| |
|
|||||| |||||||||| | ||||| | || ||||||||||||||||||||| ||||||| |
|
|
| T |
28739119 |
atggaacaaaaaagacaaaggagcagagtctaatgatccaaatgctcctctccaacctaca |
28739059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 100 - 563
Target Start/End: Original strand, 39943417 - 39943886
Alignment:
| Q |
100 |
gatctcaaacaaagcagcttacatggtcttcaaggttacaaagtaagtttgtctttctagatttcaattttctatttatttaaattgtaggcgaaaacct |
199 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||| ||| ||||||||| ||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
39943417 |
gatctcaaagaaagcagcttacatggtcttcaaggttacagggtatgtt-gtctttctacatttcaattttttatttatttaaattgtaggcgaaaatct |
39943515 |
T |
|
| Q |
200 |
acatttttgacaa-tactccactttttgtaagtatactttggaattggtatagaataataggagtttctcaatggatatcaacttaaaacacacttaatt |
298 |
Q |
| |
|
|| ||||||||| |||||||||||| ||||||||| |||| ||||| ||| ||| ||||| ||||||||| ||||||||| | ||||||| | |||||| |
|
|
| T |
39943516 |
actattttgacaaatactccactttt-gtaagtataatttgaaattgatatggaaaaatagtagtttctcattggatatcatcgtaaaacatagttaatt |
39943614 |
T |
|
| Q |
299 |
ggattgaaacaagtacaaaacttgaatttggacat----------actagatctttttcaatgtgtgactggttgataatgtattcttttggtagttttc |
388 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | ||||| |||||| ||||| |||||||| |||||||||||||||||| ||||| |
|
|
| T |
39943615 |
agattgaaacaagtacaaaactggaatttggacattttctgatgcaatagat-tttttcgatgtg--actggttggtaatgtattcttttggtatttttc |
39943711 |
T |
|
| Q |
389 |
taattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttgtgaaagttcttggcacaactctttta |
488 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39943712 |
taattgtattctctttaaactacaggttttcataggcatagcaatgattcttggtgatggtctatacaactttgtgaaagttcttggcacaactcttata |
39943811 |
T |
|
| Q |
489 |
ggtttgaaaaaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcctctcccacctaca |
563 |
Q |
| |
|
|||||| | ||||||| |||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
39943812 |
ggtttgtataaacaattgaagaaaaaagacaaaggagcacagtctgaggatccaaatgctcctctcccacctaca |
39943886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 463
Target Start/End: Complemental strand, 29246126 - 29246074
Alignment:
| Q |
411 |
caggttttcatagccatagcaatgatccttggtgatggtctatacaactttgt |
463 |
Q |
| |
|
||||| || ||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
29246126 |
caggtatttatagccatagccatgatccttggagatggtctatacaactttgt |
29246074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University