View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1169_low_40 (Length: 347)

Name: NF1169_low_40
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1169_low_40
NF1169_low_40
[»] chr5 (20 HSPs)
chr5 (101-204)||(10564992-10565095)
chr5 (100-204)||(10604716-10604820)
chr5 (102-204)||(10763274-10763376)
chr5 (100-204)||(10611674-10611778)
chr5 (100-204)||(11048798-11048902)
chr5 (100-204)||(10216890-10216994)
chr5 (94-204)||(10740840-10740950)
chr5 (94-204)||(10580962-10581072)
chr5 (94-204)||(10717081-10717191)
chr5 (100-204)||(10747156-10747260)
chr5 (94-204)||(9836469-9836579)
chr5 (94-204)||(19606006-19606116)
chr5 (94-204)||(7192963-7193073)
chr5 (94-204)||(10558860-10558970)
chr5 (94-197)||(9825058-9825161)
chr5 (122-200)||(10588575-10588653)
chr5 (109-201)||(10660229-10660321)
chr5 (94-204)||(9850841-9850952)
chr5 (109-167)||(10652380-10652438)
chr5 (204-238)||(10604842-10604876)
[»] chr2 (1 HSPs)
chr2 (94-204)||(17923544-17923654)
[»] chr6 (5 HSPs)
chr6 (101-204)||(12899535-12899638)
chr6 (94-204)||(12907148-12907258)
chr6 (94-204)||(12932237-12932347)
chr6 (94-204)||(12948602-12948712)
chr6 (94-204)||(12958036-12958146)
[»] scaffold0692 (1 HSPs)
scaffold0692 (109-204)||(7266-7361)
[»] chr3 (1 HSPs)
chr3 (94-204)||(31467303-31467413)
[»] chr8 (1 HSPs)
chr8 (122-200)||(28605612-28605690)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 10564992 - 10565095
Alignment:
Q  101 gacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaaatggaag 200  Q
    ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  10564992 gacaccgaaatttagttaaggttttaacctgttgttcaagtacagattacaaaggtcaagaatttaaagctctggtttttgagtacatgaaaaatggaag 10565091  T
Q  201 ctta 204  Q
    ||||    
T  10565092 ctta 10565095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 10604716 - 10604820
Alignment:
Q  100 agacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaaatggaa 199  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||||||||||||||    
T  10604716 agacaccggaatttagttcaagttttaacatgttgttctagtacagattacaaaggtcaagaatttaaagctctagtttttgattacatgaaaaatggaa 10604815  T
Q  200 gctta 204  Q
    |||||    
T  10604816 gctta 10604820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 10763376 - 10763274
Alignment:
Q  102 acaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaaatggaagc 201  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| | ||||||||||||||||||    
T  10763376 acaccggaatttagttaagattttaacatgttgttctagtactgattataaaggtcaagaatttaaagctctggtttttgattacatgaaaaatggaagc 10763277  T
Q  202 tta 204  Q
    |||    
T  10763276 tta 10763274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 10611674 - 10611778
Alignment:
Q  100 agacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaaatggaa 199  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| | ||||||||||||||||    
T  10611674 agacaccgaaatttagttaagattttaacatgttgttctagtacagattacaaaggtcaagaatttaaagccctagtttttgattacatgaaaaatggaa 10611773  T
Q  200 gctta 204  Q
    |||||    
T  10611774 gctta 10611778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 11048902 - 11048798
Alignment:
Q  100 agacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaaatggaa 199  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||    
T  11048902 agacaccgaaacttagttaaggttttaacctgttgttctagtacagattacaaaggtgaagaatttaaagcactagtttttgattacatgaaaaatggaa 11048803  T
Q  200 gctta 204  Q
    |||||    
T  11048802 gctta 11048798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 10216994 - 10216890
Alignment:
Q  100 agacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaaatggaa 199  Q
    |||||||| || | ||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| |||||| | ||||||||||||||||    
T  10216994 agacaccgaaactcagttaaggttttaacatgttgttctagtacaaactacaaaggtcaagaatttaaagctctagttttttattacatgaaaaatggaa 10216895  T
Q  200 gctta 204  Q
    |||||    
T  10216894 gctta 10216890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 10740950 - 10740840
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaa 193  Q
    ||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||   ||||||||||| |||||| | ||||||||||    
T  10740950 aatattagacaccgaaatttagttaagattttgacatgttgttctagtacagattacaaaggtcaaacttttaaagctcttgtttttgattacatgaaaa 10740851  T
Q  194 atggaagctta 204  Q
    |||||||||||    
T  10740850 atggaagctta 10740840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 10580962 - 10581072
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaa 193  Q
    ||||| |||||||  |||||||| |||||| |||||||||||||||||||| ||||||||||  |||||||||||||| | |||||| | ||||||||||    
T  10580962 aatattagacaccaaaatttagtcaaggttctaacatgttgttctagtacaaattacaaaggccaagaatttaaagctttagttttttattacatgaaaa 10581061  T
Q  194 atggaagctta 204  Q
    |||||||||||    
T  10581062 atggaagctta 10581072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 10717191 - 10717081
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaa 193  Q
    |||||||||||||| ||| |||| ||| | ||||||||||||||||||||||||||||||||| ||   ||||||||||| |||||| | ||||||||||    
T  10717191 aatatcagacaccgaaatctagtgaagatattaacatgttgttctagtacagattacaaaggtcaaacttttaaagctctagtttttgattacatgaaaa 10717092  T
Q  194 atggaagctta 204  Q
    |||||||||||    
T  10717091 atggaagctta 10717081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 10747260 - 10747156
Alignment:
Q  100 agacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaaatggaa 199  Q
    |||||||| |||||||||||| ||||||| ||||||||||||| ||||||||||| | | || ||||||||||| |||||| | ||||| ||||||||||    
T  10747260 agacaccgaaatttagttaagattttaacgtgttgttctagtatagattacaaagttcaggagtttaaagctctagttttttattacataaaaaatggaa 10747161  T
Q  200 gctta 204  Q
    |||||    
T  10747160 gctta 10747156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 9836579 - 9836469
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaa 193  Q
    ||||| ||||| || ||||| || |||||| ||||||||||||||||||  ||||| ||||||| ||||||||||||| | |||||| | ||||||||||    
T  9836579 aatattagacatcgaaatttggtcaaggttataacatgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaa 9836480  T
Q  194 atggaagctta 204  Q
    |||||||||||    
T  9836479 atggaagctta 9836469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 19606116 - 19606006
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaa 193  Q
    ||||| ||||| || |||||||||||| ||||||| |||||||||||||  ||| ||||||||  |||||| |||||||| |||||| ||||||||| ||    
T  19606116 aatattagacatcgaaatttagttaagattttaacttgttgttctagtattgataacaaaggtctagaattcaaagctctagtttttgagtacatgagaa 19606017  T
Q  194 atggaagctta 204  Q
    |||||||||||    
T  19606016 atggaagctta 19606006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 7192963 - 7193073
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaa 193  Q
    ||||| ||||| || ||||| |||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||| | || ||| | |||||||| |    
T  7192963 aatattagacatcgaaatttggttaagattttgacatgttgttccagtacagattacaaaggtcaagaatttaaagctttagtctttgaatacatgaaca 7193062  T
Q  194 atggaagctta 204  Q
    | |||||||||    
T  7193063 acggaagctta 7193073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 10558860 - 10558970
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaa 193  Q
    ||||| ||||| || ||| | |||||| ||||||| |||||||||||||  |||||||||||| | ||||| |||||||| |||||| | ||||||||||    
T  10558860 aatattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaa 10558959  T
Q  194 atggaagctta 204  Q
    |||||||||||    
T  10558960 atggaagctta 10558970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 9825058 - 9825161
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaa 193  Q
    ||||| ||||| || ||||| |||||| |||||||||||| ||||||||  |||||||||||  ||||||| |||||||| |||||| |||||||| |||    
T  9825058 aatattagacatcgaaatttggttaagattttaacatgtttttctagtatcgattacaaagggcaagaattcaaagctctagtttttgagtacatgcaaa 9825157  T
Q  194 atgg 197  Q
    ||||    
T  9825158 atgg 9825161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 10588653 - 10588575
Alignment:
Q  122 ttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaaatggaag 200  Q
    ||||||||||||||||| |||| ||||| |||||| |||||||||||||| | |||||| | |||||||||||||||||    
T  10588653 ttttaacatgttgttctggtactgattataaaggtcaagaatttaaagctttagtttttgattacatgaaaaatggaag 10588575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 10660321 - 10660229
Alignment:
Q  109 aatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaaatggaagc 201  Q
    ||||| || |||||||| ||||||||||| |||||||||||||||||| |||| ||||| ||| | || ||| | |||||||| |||||||||    
T  10660321 aatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagc 10660229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 9850952 - 9850841
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaa-gctctggtttttcagtacatgaaa 192  Q
    ||||| ||||| || ||||| |||||| ||||||| | |||||||||||  |||||||||||  | ||||| ||| ||||| |||||| ||||||||| |    
T  9850952 aatattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagctctagttttttagtacatgata 9850853  T
Q  193 aatggaagctta 204  Q
    ||||||||||||    
T  9850852 aatggaagctta 9850841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 10652438 - 10652380
Alignment:
Q  109 aatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaa 167  Q
    ||||| ||||||||||| ||||||||||| ||||| |||||||||||| |||| |||||    
T  10652438 aatttggttaaggttttgacatgttgttcgagtaccgattacaaaggtcaagagtttaa 10652380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 10604842 - 10604876
Alignment:
Q  204 attttaaatgcagagcctccaacaacattggacct 238  Q
    |||||||||||||||||||||||||| ||||||||    
T  10604842 attttaaatgcagagcctccaacaacgttggacct 10604876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 17923654 - 17923544
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaa 193  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||| | ||||||||||    
T  17923654 aatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa 17923555  T
Q  194 atggaagctta 204  Q
    |||||||||||    
T  17923554 atggaagctta 17923544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 12899535 - 12899638
Alignment:
Q  101 gacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaaatggaag 200  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||| | |||||||||||||||||    
T  12899535 gacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaag 12899634  T
Q  201 ctta 204  Q
    ||||    
T  12899635 ctta 12899638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 12907148 - 12907258
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaa 193  Q
    ||||| |||||| | ||||| |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||| | ||||||||||    
T  12907148 aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa 12907247  T
Q  194 atggaagctta 204  Q
    |||||||||||    
T  12907248 atggaagctta 12907258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 12932237 - 12932347
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaa 193  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| || |||||| | ||||||||||    
T  12932237 aatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagcactagtttttgaatacatgaaaa 12932336  T
Q  194 atggaagctta 204  Q
    |||||||||||    
T  12932337 atggaagctta 12932347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 12948602 - 12948712
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaa 193  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||| ||| || |||||||  |||||||||||||||| |||||| | ||||||||||    
T  12948602 aatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaataacaaaggccaagaatttaaagctctagtttttgaatacatgaaaa 12948701  T
Q  194 atggaagctta 204  Q
    |||||||||||    
T  12948702 atggaagctta 12948712  T

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Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 12958036 - 12958146
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaa 193  Q
    ||||| |||||||| ||||| |||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||| | |||||| |||    
T  12958036 aatattagacaccgaaatttggttagggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatggaaa 12958135  T
Q  194 atggaagctta 204  Q
    |||||||||||    
T  12958136 atggaagctta 12958146  T

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Target: scaffold0692 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 7266 - 7361
Alignment:
Q  109 aatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaaatggaagctta 204  Q
    ||||| |||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||| | |||||||||||||||||||||    
T  7266 aatttggttagggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagctta 7361  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 31467413 - 31467303
Alignment:
Q  94 aatatcagacaccggaatttagttaaggttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaa 193  Q
    ||||| |||||||| ||||| |||||| |||||||| | ||||| |||||||||| ||||| | |||||||||||||||| |||||  ||||||||||||    
T  31467413 aatattagacaccgaaatttggttaagattttaacaagctgttccagtacagatttcaaagatcaagaatttaaagctcttgttttcgagtacatgaaaa 31467314  T
Q  194 atggaagctta 204  Q
    | |||||||||    
T  31467313 acggaagctta 31467303  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 28605612 - 28605690
Alignment:
Q  122 ttttaacatgttgttctagtacagattacaaaggtgaagaatttaaagctctggtttttcagtacatgaaaaatggaag 200  Q
    |||||||||||||||| ||||  |||||||| ||| | ||||| |||||| | |||||| |||||||| ||||||||||    
T  28605612 ttttaacatgttgttcaagtatggattacaatggtaatgaattcaaagctttagtttttgagtacatggaaaatggaag 28605690  T

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