View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_42 (Length: 341)
Name: NF1169_low_42
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 2382556 - 2382785
Alignment:
| Q |
12 |
caatataccatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcacatccctcaacctcactcacttctctcaataca |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2382556 |
caatataccatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcacatccctcaacctcactcacttctctcaataca |
2382655 |
T |
|
| Q |
112 |
attacctcaacacgcttcttacgcaaaatctctgtttcacctttagatctcaaatcactcattctctccaacctcttcaaaatctgtataaatggattgc |
211 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2382656 |
attacctcaacacgcttcttatgcaaaatctctgtttcacctttagatctcaaatcactcattctctccaacctcttcaaaatccatataaatggattgc |
2382755 |
T |
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| Q |
212 |
gagctttgtccaaaaagatgaaaaaattga |
241 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
2382756 |
gagctttgtccaaaaagatgaaaaaattga |
2382785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 2380198 - 2380411
Alignment:
| Q |
18 |
accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcacatccctcaacctcactcacttctctcaatacaattacc |
117 |
Q |
| |
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||||||||||| |||||||||||||| | |||| | ||| |||||||||||||| |||||||| |||||||| |||| ||||||| ||| |
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| T |
2380198 |
accatcccttttattcctcgcctcttgcaaaggtgtcgtaacatcacatccctcaatctcacatccatcaacctccctca---------atacaatcacc |
2380288 |
T |
|
| Q |
118 |
tcaacacgcttcttacgcaaaatctctgtttcacctttagatctcaaatcactcattctctccaacctcttcaaaatctgtataaatggattgcgagctt |
217 |
Q |
| |
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|||||||||||||||| |||| |||| | || |||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||| |
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| T |
2380289 |
tcaacacgcttcttacacaaa-tctccgctttacctttagatctcaaatcgctcattctctccaacctcttcaaaatcccgaaaaatggattgcgacctt |
2380387 |
T |
|
| Q |
218 |
tgtccaaaaagatgaaaaaattga |
241 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
2380388 |
tgtccaaaaagatgaaaaatttga |
2380411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 2391081 - 2391303
Alignment:
| Q |
18 |
accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcacatccctcaacctcactcacttctctcaatacaattacc |
117 |
Q |
| |
|
||||||||||||||||||| |||||| | || || |||||||||||||||||||| |||||||| |||||||| | |||||||||||| |||| || |
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| T |
2391081 |
accatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaatgcaatcgcc |
2391180 |
T |
|
| Q |
118 |
tcaacacgcttcttacgcaaaatctctgtttcacctttagatctcaaatcactcattctctccaacctcttcaaaatctgtataaatggattgcgagctt |
217 |
Q |
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||||||||||||||| |||| |||| || ||||||| |||| ||| |||||||| |||||| ||| ||||||| || | |||| || ||||||| |
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| T |
2391181 |
ccaacacgcttcttacccaaa-tctccactttccctttagtcctcagatcgctcattctttccaacttctacaaaatccctaaagatgggttccgagctt |
2391279 |
T |
|
| Q |
218 |
tgtccaaaaagatgaaaaaattga |
241 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
2391280 |
tgtccaaaaagatgaaaaatttga |
2391303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 2381453 - 2381675
Alignment:
| Q |
18 |
accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcacatccctcaacctcactcacttctctcaatacaattacc |
117 |
Q |
| |
|
||||||||||||||||||| ||||||| | | || ||| |||||||||||||||| || ||||| |||||||||| |||| |||| | ||||| ||| |
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| T |
2381453 |
accatccctttcattcctcaactcttccaacgcttctctagtgtcacatccctcaatctcgcatccagcaacctcacttacttttctctacacaatcacc |
2381552 |
T |
|
| Q |
118 |
tcaacacgcttcttacgcaaaatctctgtttcacctttagatctcaaatcactcattctctccaacctcttcaaaatctgtataaatggattgcgagctt |
217 |
Q |
| |
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||||| ||||||||| | ||||||| | || |||||||| |||||||| |||||| ||||||| | || |||||| || | |||| || ||||||| |
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| T |
2381553 |
ccaacatgcttcttac-ccaaatctccgctttccctttagacctcaaatcgctcattttctccaagttttttaaaatccctaaagatgggttccgagctt |
2381651 |
T |
|
| Q |
218 |
tgtccaaaaagatgaaaaaattga |
241 |
Q |
| |
|
||||||||||||||||||| |||| |
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| T |
2381652 |
tgtccaaaaagatgaaaaatttga |
2381675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 2621237 - 2621298
Alignment:
| Q |
18 |
accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcac |
79 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| ||||| |
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| T |
2621237 |
accatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaacatcac |
2621298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 2393837 - 2393875
Alignment:
| Q |
201 |
aaatggattgcgagctttgtccaaaaagatgaaaaaatt |
239 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
2393837 |
aaatgggttgcgagctttgtcccaaaagatgaaaaaatt |
2393875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 2460408 - 2460370
Alignment:
| Q |
203 |
atggattgcgagctttgtccaaaaagatgaaaaaattga |
241 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||||| |
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| T |
2460408 |
atggattgcgagttctgtccaaaaagatgaaaaaattga |
2460370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 5102163 - 5102224
Alignment:
| Q |
18 |
accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcac |
79 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||| ||||||| |||||||| ||||| ||||| |
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| T |
5102163 |
accatccctttcattcctctccttttcgaaaggttccctaacgtcacatcactcaacatcac |
5102224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 2486103 - 2486071
Alignment:
| Q |
209 |
tgcgagctttgtccaaaaagatgaaaaaattga |
241 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
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| T |
2486103 |
tgcgagctttgtccaaaaagatgaaaaatttga |
2486071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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