View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1169_low_44 (Length: 336)

Name: NF1169_low_44
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1169_low_44
NF1169_low_44
[»] chr1 (7 HSPs)
chr1 (1-307)||(38227199-38227502)
chr1 (1-81)||(38227127-38227207)
chr1 (8-91)||(27780996-27781079)
chr1 (1-81)||(38227055-38227135)
chr1 (21-91)||(27777479-27777549)
chr1 (21-91)||(27782412-27782482)
chr1 (10-81)||(38226992-38227063)
[»] chr4 (1 HSPs)
chr4 (9-91)||(35250178-35250260)
[»] chr8 (1 HSPs)
chr8 (153-224)||(44989105-44989176)
[»] chr7 (2 HSPs)
chr7 (10-91)||(440929-441010)
chr7 (152-205)||(441176-441229)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 38227199 - 38227502
Alignment:
Q  1 ccttcattatcatcactttaaagctctttaaaatcaacattcttcacaacttttgccccaaaatcagtttcaccttcattaatcttcttcttctcttcaa 100  Q
    ||||||||||| |||||| ||||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||||||||| |||||||||||||||    
T  38227199 ccttcattatcgtcacttgaaagctcgttcaaatcaacattcttcacaacttttgaccctaattcagtttcaccttcattaatcgtcttcttctcttcaa 38227298  T
Q  101 tatcatgaccgccactagttagtagcacaccttgttcctttttcctcctcctcttcttcttctcattatcatccatcatattgcaagagagatttttcct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |   |||||||||||||||||||||||||||||||||||||||||||||||    
T  38227299 tatcatgaccgccactagttagtagcacaccttgttcctttttcttccgc---ttcttcttctcattatcatccatcatattgcaagagagatttttcct 38227395  T
Q  201 tttagcaccacggtgattcacatcctcataacccatgcgagatagttgcaatagaatttctgcaactgtttcaataacatcatcatcgccgtcgtcaata 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38227396 tttagcaccacggtgattcacatcctcataacccatgcgagatagttgcaatagaatttctgcaactgtttcaataacatcatcatcgtcgtcgtcaata 38227495  T
Q  301 ttcatat 307  Q
    |||||||    
T  38227496 ttcatat 38227502  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38227127 - 38227207
Alignment:
Q  1 ccttcattatcatcactttaaagctctttaaaatcaacattcttcacaacttttgccccaaaatcagtttcaccttcatta 81  Q
    ||||||||||||||||||  |||||| || |||||||||||||| |||||||||| ||| || ||||||||||||||||||    
T  38227127 ccttcattatcatcacttggaagctcgttcaaatcaacattcttaacaacttttgaccctaattcagtttcaccttcatta 38227207  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 27781079 - 27780996
Alignment:
Q  8 tatcatcactttaaagctctttaaaatcaacattcttcacaacttttgccccaaaatcagtttcaccttcattaatcttcttct 91  Q
    |||||||||||  |||||| |  ||||||| ||||||||||||||||| ||| || |  |||||||||||||||||||||||||    
T  27781079 tatcatcacttggaagctcgtccaaatcaaaattcttcacaacttttgaccctaattttgtttcaccttcattaatcttcttct 27780996  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38227055 - 38227135
Alignment:
Q  1 ccttcattatcatcactttaaagctctttaaaatcaacattcttcacaacttttgccccaaaatcagtttcaccttcatta 81  Q
    ||||||||||||||||||  ||| || || ||||||| |||||||||| |||||| ||| || |||| |||||||||||||    
T  38227055 ccttcattatcatcacttggaagttcgttcaaatcaaaattcttcacatcttttgaccctaattcagcttcaccttcatta 38227135  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 27777549 - 27777479
Alignment:
Q  21 aagctctttaaaatcaacattcttcacaacttttgccccaaaatcagtttcaccttcattaatcttcttct 91  Q
    |||||| || ||||||| ||||||||||||||||| ||| |  || |||||||||||||| ||||||||||    
T  27777549 aagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttct 27777479  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 27782412 - 27782482
Alignment:
Q  21 aagctctttaaaatcaacattcttcacaacttttgccccaaaatcagtttcaccttcattaatcttcttct 91  Q
    |||||| || ||||||| ||||||||||||||||| ||| |  || |||||||||||||| ||||||||||    
T  27782412 aagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttct 27782482  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 38226992 - 38227063
Alignment:
Q  10 tcatcactttaaagctctttaaaatcaacattcttcacaacttttgccccaaaatcagtttcaccttcatta 81  Q
    |||||||||  |||||| || ||||| | ||||||||||||||||| |||  | ||||||||||||||||||    
T  38226992 tcatcacttggaagctcgttcaaatctaaattcttcacaacttttgaccctgattcagtttcaccttcatta 38227063  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 35250178 - 35250260
Alignment:
Q  9 atcatcactttaaagctctttaaaatcaacattcttcacaacttttgccccaaaatcagtttcaccttcattaatcttcttct 91  Q
    ||||||||||  |||||| || ||||||| ||||||||||||||||| ||| |  ||||||||| ||||||||||||||||||    
T  35250178 atcatcacttgcaagctcgttcaaatcaaaattcttcacaacttttgacccgatttcagtttcagcttcattaatcttcttct 35250260  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 44989176 - 44989105
Alignment:
Q  153 cttcttcttctcattatcatccatcatattgcaagagagatttttccttttagcaccacggtgattcacatc 224  Q
    |||| ||||||||||||||||||||||||||||||| ||  ||| |||||||  | ||||||||||||||||    
T  44989176 cttcatcttctcattatcatccatcatattgcaagaaagtgtttgccttttactatcacggtgattcacatc 44989105  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 440929 - 441010
Alignment:
Q  10 tcatcactttaaagctctttaaaatcaacattcttcacaacttttgccccaaaatcagtttcaccttcattaatcttcttct 91  Q
    |||||||||  |||||| || ||||||| ||||||||||||||||| ||| || |||||  |||||||||||||| ||||||    
T  440929 tcatcacttggaagctcgttcaaatcaaaattcttcacaacttttggccctaattcagtaacaccttcattaatcatcttct 441010  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 441176 - 441229
Alignment:
Q  152 tcttcttcttctcattatcatccatcatattgcaagagagatttttccttttag 205  Q
    ||||||||||||||| ||||||||||||||||||||| || |||| ||||||||    
T  441176 tcttcttcttctcatcatcatccatcatattgcaagaaagtttttgccttttag 441229  T

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