View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1169_low_45 (Length: 335)

Name: NF1169_low_45
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1169_low_45
NF1169_low_45
[»] chr6 (3 HSPs)
chr6 (123-306)||(11362099-11362285)
chr6 (19-92)||(11361562-11361635)
chr6 (89-121)||(11361748-11361780)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 123 - 306
Target Start/End: Original strand, 11362099 - 11362285
Alignment:
Q  123 ataaaatattttgaagaaagttgatgaatatttaatgcttggttgttgttgaaaagttgatgaatgtgattttgtatgtagaagattattataaga---- 218  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  11362099 ataaaatattttgaagaaagttgatgaatatttaaagcttggttgttgttgaaaagttgatgaatgtgattttgtatgtagaagattattataagatttt 11362198  T
Q  219 annnnnnnnnnnnaagaaaatattagtgggtaggttttttattagtagggatcgaattctagacttttacatactcctttcacgttcc 306  Q
                 ||||| ||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  11362199 ttattttatttttaagaagatattagtgggta-gttttttattagtagagatcgaattctagacctttacatactcctttcacgttcc 11362285  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 11361562 - 11361635
Alignment:
Q  19 aataaattgggaagtaataggaagaaaattttccagtgttgttattttgtttttgattagttctccacttaaac 92  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11361562 aataaattgggaagtaataggaagaaaattttccagtgtttttattttgtttttgattagttctccacttaaac 11361635  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 11361748 - 11361780
Alignment:
Q  89 aaacaaaggacattgtttttatttctatcaaaa 121  Q
    |||||||||||||||||||||||||||||||||    
T  11361748 aaacaaaggacattgtttttatttctatcaaaa 11361780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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