View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1169_low_47 (Length: 332)

Name: NF1169_low_47
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1169_low_47
NF1169_low_47
[»] chr7 (6 HSPs)
chr7 (13-231)||(30567100-30567317)
chr7 (13-203)||(33078190-33078385)
chr7 (13-201)||(37888323-37888511)
chr7 (255-303)||(30567327-30567375)
chr7 (15-100)||(39770215-39770301)
chr7 (70-119)||(43201297-43201346)
[»] chr5 (5 HSPs)
chr5 (13-201)||(36571790-36571979)
chr5 (15-61)||(25670346-25670392)
chr5 (13-51)||(27405732-27405770)
chr5 (70-119)||(14279484-14279533)
chr5 (13-61)||(30644577-30644625)
[»] chr6 (6 HSPs)
chr6 (13-201)||(30446751-30446928)
chr6 (70-201)||(12513680-12513821)
chr6 (70-199)||(12502570-12502708)
chr6 (13-52)||(8222600-8222639)
chr6 (133-204)||(8222808-8222879)
chr6 (15-61)||(34242892-34242938)
[»] chr1 (9 HSPs)
chr1 (63-203)||(10265251-10265391)
chr1 (70-208)||(36231579-36231717)
chr1 (130-201)||(8471914-8471985)
chr1 (130-196)||(43739715-43739781)
chr1 (13-61)||(10265505-10265553)
chr1 (13-51)||(36231410-36231448)
chr1 (13-51)||(8471702-8471740)
chr1 (13-51)||(43739517-43739555)
chr1 (15-53)||(45363969-45364007)
[»] chr3 (12 HSPs)
chr3 (56-206)||(7008732-7008881)
chr3 (13-199)||(15007682-15007868)
chr3 (75-198)||(43476002-43476125)
chr3 (63-194)||(55027413-55027544)
chr3 (13-51)||(43475907-43475945)
chr3 (13-50)||(55027251-55027288)
chr3 (13-51)||(38571693-38571731)
chr3 (15-61)||(51305054-51305100)
chr3 (15-61)||(51999603-51999649)
chr3 (13-46)||(7008604-7008637)
chr3 (13-57)||(46136813-46136857)
chr3 (15-51)||(49406876-49406912)
[»] chr4 (13 HSPs)
chr4 (63-201)||(7695308-7695445)
chr4 (65-204)||(31335841-31335981)
chr4 (70-201)||(28901773-28901903)
chr4 (60-205)||(56054894-56055037)
chr4 (56-162)||(23538996-23539100)
chr4 (63-194)||(48505884-48506015)
chr4 (13-51)||(28901603-28901641)
chr4 (13-50)||(48506140-48506177)
chr4 (13-50)||(56054736-56054773)
chr4 (15-57)||(38174033-38174075)
chr4 (15-61)||(48403441-48403487)
chr4 (13-61)||(23539206-23539254)
chr4 (13-61)||(31336071-31336119)
[»] chr8 (7 HSPs)
chr8 (63-204)||(12271739-12271880)
chr8 (11-51)||(13497756-13497796)
chr8 (13-50)||(12272005-12272042)
chr8 (133-201)||(7511047-7511114)
chr8 (13-51)||(7511302-7511340)
chr8 (133-203)||(13497989-13498059)
chr8 (15-47)||(31129002-31129034)
[»] chr2 (7 HSPs)
chr2 (63-194)||(9118476-9118607)
chr2 (63-204)||(1072341-1072482)
chr2 (13-50)||(1072607-1072644)
chr2 (13-50)||(9118314-9118351)
chr2 (70-119)||(16441754-16441803)
chr2 (15-62)||(7762723-7762770)
chr2 (15-51)||(13151156-13151192)
[»] scaffold0021 (1 HSPs)
scaffold0021 (15-61)||(109758-109804)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 30567100 - 30567317
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtggcccccgcgtcagaattcaacatgtttaattctttcatctactctcacctc 112  Q
    |||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30567100 aatattaagatgataaaaatccaaacagccaatcgaaaccagccacgtggcccccgcgtcagaattcaacatgtttaattctttcatctactctcacctc 30567199  T
Q  113 cacatcannnnnnnnaccattttcaacacccacatgcaatggtttcaacatgttgaagtttggtttcaacaagccattgcacttggtctaaggtgaattc 212  Q
    |||||||        |||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30567200 cacatca-tatttttaccattttcaacactcacatgcaatggtttcaatatgttgaagcttggtttcaacaagccattgcacttggtctaaggtgaattc 30567298  T
Q  213 tagccactaggcaacctga 231  Q
    |||||||||||| ||||||    
T  30567299 tagccactaggctacctga 30567317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 33078385 - 33078190
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtggccccc-gcgtcagaattcaacatgtttaattctttcatctactctcacct 111  Q
    |||||||||||||||||||| |||||||||||||||||| || ||||| |||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  33078385 aatattaagatgataaaaattcaagcagtcaatcgaaaccagccacgttgccccccgcgtcagaattcaacatgttgaattcattcatctactctcacct 33078286  T
Q  112 ccacatca----nnnnnnnnaccattttcaacacccacatgcaatggtttcaacatgttgaagtttggtttcaacaagccattgcacttggtctaa 203  Q
    ||||||||             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  33078285 ccacatcatatttttttttttccattttcaacacccacatgcaatggtttcaacatgttgaaggttggtttcaacaactcattgcacttggtctaa 33078190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 37888323 - 37888511
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtggcc-cccgcgtcagaattcaacatgtttaattctttcatctactctcacct 111  Q
    ||||||||||||||||||||  |||||| |||| ||||| || |||||| || ||||||||| |||||||| |||||||||| |||||||||||||||||    
T  37888323 aatattaagatgataaaaatttaagcagccaatagaaaccagccacgtgtccacccgcgtcataattcaacttgtttaattcattcatctactctcacct 37888422  T
Q  112 ccacatcannnnnnnnaccattttcaacacccacatgcaatggtttcaacatgttgaagtttggtttcaacaagccattgcacttggtct 201  Q
     |||||||        |||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  37888423 tcacatcattttttt-accattttcaacactcacatgcaatgctttcaacatgttgaagcttggtttcaacaagctattgcacttggtct 37888511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 30567327 - 30567375
Alignment:
Q  255 ctcttgtgtatggaaatattgtagttaaaagtaaggatccattttaaat 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30567327 ctcttgtgtatggaaatattgtagttaaaagtaaggatccattttaaat 30567375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 39770215 - 39770301
Alignment:
Q  15 tattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtggcccccgcgtcaga-attcaacatgtttaattctttcatc 100  Q
    |||||||| ||||||||||||||||| |||||| |||||| |||||| |||| ||||||||  ||||||||  ||||| ||||||||    
T  39770215 tattaagaagataaaaatccaagcagccaatcgtaacaagccacgtgtcccctgcgtcagactttcaacatacttaatcctttcatc 39770301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 43201346 - 43201297
Alignment:
Q  70 gtcagaattcaacatgtttaattctttcatctactctcacctccacatca 119  Q
    |||||| ||||||||||||| || |||||||| |||||||||||||||||    
T  43201346 gtcagacttcaacatgtttatttgtttcatctcctctcacctccacatca 43201297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 36571979 - 36571790
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtggccccc-gcgtcagaattcaacatgtttaattctttcatctactctcacct 111  Q
    |||||||||||||||||||||||||||| |||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  36571979 aatattaagatgataaaaatccaagcagccaatcgaaaccagccacgtggccccctgcgtcagaattcaacatgtttaattctttcatctactcttacct 36571880  T
Q  112 ccacatcannnnnnnnaccattttcaacacccacatgcaatggtttcaacatgttgaagtttggtttcaacaagccattgcacttggtct 201  Q
    ||||||||        |||||||||||||||||||| ||||||||||||| | |||||| |||||||||| ||| |||||||||||||||    
T  36571879 ccacatcattttttttaccattttcaacacccacatacaatggtttcaacgtattgaagcttggtttcaataagtcattgcacttggtct 36571790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 25670392 - 25670346
Alignment:
Q  15 tattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtg 61  Q
    |||||||| ||||||||||||||||| |||||| |||||| ||||||    
T  25670392 tattaagaagataaaaatccaagcagccaatcgtaacaagccacgtg 25670346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 27405770 - 27405732
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaac 51  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  27405770 aatattaagatgataaaaatccaagcagccaaacgaaac 27405732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 14279484 - 14279533
Alignment:
Q  70 gtcagaattcaacatgtttaattctttcatctactctcacctccacatca 119  Q
    |||||| ||||||||||||| ||||||||||| ||||||| | |||||||    
T  14279484 gtcagacttcaacatgtttacttctttcatctcctctcacattcacatca 14279533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 30644625 - 30644577
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtg 61  Q
    |||||||||||||||||||| ||| ||| ||||||||||| | ||||||    
T  30644625 aatattaagatgataaaaattcaaccagccaatcgaaacacgccacgtg 30644577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 30446751 - 30446928
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtggcccccgcgtcagaattcaacatgtttaattctttcatctactctcacctc 112  Q
    |||||||||||||||||||| ||||||| |||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30446751 aatattaagatgataaaaattcaagcagccaatcgaaaccag----------cccgcgtcagaattcaacatgtttaattctttcatctactctcacctc 30446840  T
Q  113 cacatcannnnnnnnaccattttcaacacccacatgcaatggtttcaacatgttgaagtttggtttcaacaagccattgcacttggtct 201  Q
    |||||||        |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  30446841 cacatcattttttt-accattttcaacacccacatgcaatgatttcaacatgttgaagcttggtttcaacaagccattgcacttggtct 30446928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 201
Target Start/End: Original strand, 12513680 - 12513821
Alignment:
Q  70 gtcagaattcaacatgtttaattctttcatctactctcacctccacatca--nnnnnnnnaccattttcaacacccacatgc--------aatggtttca 159  Q
    |||||| |||||||||||||||| |||||||| |||||||||||||||||            ||||||||||||||||||||        ||||||| ||    
T  12513680 gtcagatttcaacatgtttaattgtttcatctcctctcacctccacatcattttttttttttcattttcaacacccacatgcaaatatgtaatggttgca 12513779  T
Q  160 acatgttgaagtttggtttcaacaagccattgcacttggtct 201  Q
    ||||||||||| |||| |||||||| ||||||||||||||||    
T  12513780 acatgttgaagcttggattcaacaacccattgcacttggtct 12513821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 12502570 - 12502708
Alignment:
Q  70 gtcagaattcaacatgtttaattctttcatctactctcacctccacatca-nnnnnnnnaccattttcaacacccacatgc--------aatggtttcaa 160  Q
    |||||| |||||||||||||||| |||||||| || ||||||||||||||           ||||||||||||||||||||        ||||||||| |    
T  12502570 gtcagatttcaacatgtttaattgtttcatctcctttcacctccacatcatttttttttttcattttcaacacccacatgcaaatataaaatggtttcga 12502669  T
Q  161 catgttgaagtttggtttcaacaagccattgcacttggt 199  Q
    |||||||||| |||| |||||||| ||||||||||||||    
T  12502670 catgttgaagcttggattcaacaacccattgcacttggt 12502708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 8222600 - 8222639
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaaca 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  8222600 aatattaagatgataaaaattcaagcagccaatcgaaaca 8222639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 8222808 - 8222879
Alignment:
Q  133 tttcaacacccacatgcaatggtttcaacatgttgaagtttggtttcaacaagccattgcacttggtctaag 204  Q
    |||||| |||||| | |||||||| ||||||||||||| ||   |||||| | |||||||||||||||||||    
T  8222808 tttcaatacccacgtacaatggttccaacatgttgaagcttccattcaactatccattgcacttggtctaag 8222879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 34242892 - 34242938
Alignment:
Q  15 tattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtg 61  Q
    |||||||| |||||||||||||||||||||||| |||| | ||||||    
T  34242892 tattaagaagataaaaatccaagcagtcaatcgtaacatgccacgtg 34242938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 63 - 203
Target Start/End: Complemental strand, 10265391 - 10265251
Alignment:
Q  63 cccccgcgtcagaattcaacatgtttaattctttcatctactctcacctccacatcannnnnnnnaccattttcaacacccacatgcaatggtttcaaca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||         |||||||||||||| |||||||||||||||||||    
T  10265391 cccccgcgtcagaattcaacatgtttaattctttcatctactctcacctccgcatcatttttttttccattttcaacaccaacatgcaatggtttcaaca 10265292  T
Q  163 tgttgaagtttggtttcaacaagccattgcacttggtctaa 203  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  10265291 tgttgaagcttggtttcaacaacccattgcacttggtctaa 10265251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 36231579 - 36231717
Alignment:
Q  70 gtcagaattcaacatgtttaattctttcatctactctcacctccacatcannnnnnnnaccattttcaacacccacatgcaatggtttcaacatgttgaa 169  Q
    |||||| |||||||||||||||| |||||||| ||||||| |  ||||||          ||||||||||||||||||||||||||||||||||||||||    
T  36231579 gtcagatttcaacatgtttaattgtttcatctcctctcacatgtacatcattttttttttcattttcaacacccacatgcaatggtttcaacatgttgaa 36231678  T
Q  170 gtttggtttcaacaagccattgcacttggtctaaggtga 208  Q
      ||||||||||||| |||||||||||| ||||| ||||    
T  36231679 acttggtttcaacaacccattgcacttgatctaatgtga 36231717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 8471914 - 8471985
Alignment:
Q  130 cattttcaacacccacatgcaatggtttcaacatgttgaagtttggtttcaacaagccattgcacttggtct 201  Q
    |||||||||||| |||||| ||||||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  8471914 cattttcaacacacacatgtaatggtttcaacatgttgaagcttggtttcaactacccattgcacttggtct 8471985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 43739715 - 43739781
Alignment:
Q  130 cattttcaacacccacatgcaatggtttcaacatgttgaagtttggtttcaacaagccattgcactt 196  Q
    ||||||||| |||||||||||||  |||||||||||||||| ||||||||||| | ||||| |||||    
T  43739715 cattttcaatacccacatgcaataatttcaacatgttgaagcttggtttcaactacccattacactt 43739781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 10265553 - 10265505
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtg 61  Q
    |||||||||||||||||||||||||||| |||||||||| || ||||||    
T  10265553 aatattaagatgataaaaatccaagcagccaatcgaaaccagccacgtg 10265505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 36231410 - 36231448
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaac 51  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  36231410 aatattaagatgataaaaatccaagcagccaatcgaaac 36231448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 8471702 - 8471740
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaac 51  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  8471702 aatattaagatgataaaaattcaaacagtcaatcgaaac 8471740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 43739517 - 43739555
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaac 51  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  43739517 aatattaagatgataaaaattcaagcagccaatcgaaac 43739555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 45363969 - 45364007
Alignment:
Q  15 tattaagatgataaaaatccaagcagtcaatcgaaacaa 53  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  45363969 tattaagaagataaaaatccaagcagtcaatcgtaacaa 45364007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 56 - 206
Target Start/End: Original strand, 7008732 - 7008881
Alignment:
Q  56 cacgtggcccccgcgtcagaattcaacatgtttaattctttcatctactctcacctccacatcannnnnnnnaccattttcaacacccacatgcaatggt 155  Q
    |||||||||| |||||||||||||||||| |||||||||||||| | |||||||||||||||||        |||||||||||||||||||| |||||||    
T  7008732 cacgtggccctcgcgtcagaattcaacatatttaattctttcatatgctctcacctccacatcattttttt-accattttcaacacccacatacaatggt 7008830  T
Q  156 ttcaacatgttgaagtttggtttcaacaagccattgcacttggtctaaggt 206  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  7008831 ttcaacatgttgaagcttggtttcaacaagccattgcacttggtcttaggt 7008881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 15007682 - 15007868
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtggcccccg-cgtcagaattcaacatgtttaattctttcatctactctcacct 111  Q
    |||||| |||||||||||||  |||||| |||||||||| || ||| ||| | ||  ||||||||||||||||||| ||||| |||||||||||||||||    
T  15007682 aatatttagatgataaaaattgaagcagccaatcgaaaccagccacttgggctcctacgtcagaattcaacatgttgaattcattcatctactctcacct 15007781  T
Q  112 ccacatcannnnnnnnaccattttcaacacccacatgcaatggtttcaacatgttgaagtttggtttcaacaagccattgcacttggt 199  Q
    |||||| |         |||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||||||||||    
T  15007782 ccacattatttttttt-ccattttcaacacccacatgcaatggtttcaacatgttgaaggttggtttcgacaacctattgcacttggt 15007868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 75 - 198
Target Start/End: Original strand, 43476002 - 43476125
Alignment:
Q  75 aattcaacatgtttaattctttcatctactctcacctccacatcannnnnnnnaccattttcaacacccacatgcaatggtttcaacatgttgaagtttg 174  Q
    |||||||||||||||||| |||||||||||||||| |||||||||         |||||||||||||||||||||||||||||| ||||||||||| |||    
T  43476002 aattcaacatgtttaattatttcatctactctcacttccacatcattttttttcccattttcaacacccacatgcaatggtttctacatgttgaagcttg 43476101  T
Q  175 gtttcaacaagccattgcacttgg 198  Q
    |||||||||| |||||||||||||    
T  43476102 gtttcaacaacccattgcacttgg 43476125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 194
Target Start/End: Original strand, 55027413 - 55027544
Alignment:
Q  63 cccccgcgtcagaattcaacatgtttaattctttcatctactctcacctccacatcannnnnnnnaccattttcaaca-cccacatgcaatggtttcaac 161  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||         |||||||||||| ||| | |||||||| ||||||    
T  55027413 cccccgcgtcagaattcaacatgtttaatatattcatctactctcacctccacatcatttttccc-ccattttcaacacccctcttgcaatggattcaac 55027511  T
Q  162 atgttgaagtttggtttcaacaagccattgcac 194  Q
    ||||||||| |||| |||||||  |||||||||    
T  55027512 atgttgaaggttggattcaacaccccattgcac 55027544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 43475907 - 43475945
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaac 51  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  43475907 aatattaagatgataaaaatccaagcagccaatcgaaac 43475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 55027251 - 55027288
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaa 50  Q
    |||||||||||||||||||||||||||| |||||||||    
T  55027251 aatattaagatgataaaaatccaagcagccaatcgaaa 55027288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 38571731 - 38571693
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaac 51  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  38571731 aatattaagatgataaaaatccaagcagccaaacgaaac 38571693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 51305054 - 51305100
Alignment:
Q  15 tattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtg 61  Q
    ||||||||  |||||||||||||||| |||||| |||||||||||||    
T  51305054 tattaagaaaataaaaatccaagcagccaatcgtaacaagtcacgtg 51305100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 51999649 - 51999603
Alignment:
Q  15 tattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtg 61  Q
    |||||||| ||||||||||||||||| |||||| |||||| ||||||    
T  51999649 tattaagaagataaaaatccaagcagccaatcgtaacaagccacgtg 51999603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 7008604 - 7008637
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatc 46  Q
    |||||||||||||||||||||||||||| |||||    
T  7008604 aatattaagatgataaaaatccaagcagccaatc 7008637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 46136857 - 46136813
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaacaagtca 57  Q
    ||||||||||||||||||||| ||||| ||||||| |||| ||||    
T  46136857 aatattaagatgataaaaatcaaagcaatcaatcgtaacatgtca 46136813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 49406912 - 49406876
Alignment:
Q  15 tattaagatgataaaaatccaagcagtcaatcgaaac 51  Q
    ||||||||||||||||||| | |||||||||||||||    
T  49406912 tattaagatgataaaaatctatgcagtcaatcgaaac 49406876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 7695445 - 7695308
Alignment:
Q  63 cccccgcgtcagaattcaacatgtttaattctttcatctactctcacctccacatcannnnnnnnaccattttcaacacccacatgcaatggtttcaaca 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||| |||||||||||||||||||| |||||||||    
T  7695445 cccccgcgtcagaattcaacatgtttaattctttcatctactctcacctccacatcattcttttttccactttcaacacccacatgcaattgtttcaaca 7695346  T
Q  163 tgttgaagtttggtttcaacaagccattgcacttggtct 201  Q
    |||||||| |||| |||||||| || |||||||||||||    
T  7695345 tgttgaaggttggattcaacaa-cccttgcacttggtct 7695308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 31335981 - 31335841
Alignment:
Q  65 cccgcgtcagaattcaacatgtttaattctttcatctactctcacctccacatca-nnnnnnnnaccattttcaacacccacatgcaatggtttcaacat 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||||||||||||    
T  31335981 cccgcgtcagaattcaacatgtttaattctttcatctactctcacctccacattattttttttttccattttcaacacccacatgcaatggtttcaacat 31335882  T
Q  164 gttgaagtttggtttcaacaagccattgcacttggtctaag 204  Q
     ||||||  |||||||||||| |||||||| ||| ||||||    
T  31335881 tttgaagcatggtttcaacaacccattgcagttgatctaag 31335841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 201
Target Start/End: Original strand, 28901773 - 28901903
Alignment:
Q  70 gtcagaattcaacatgtttaattctttcatctactctcacctccacatcannnnnnnnaccattttcaacacccacatgcaatggtttcaacatgttgaa 169  Q
    |||||| |||||||||||||| |||||||||| |||||||||||||||||         | |||||||||||||||||||||||||||||||||||||||    
T  28901773 gtcagatttcaacatgtttaactctttcatctcctctcacctccacatcatttttttttc-attttcaacacccacatgcaatggtttcaacatgttgaa 28901871  T
Q  170 gtttggtttcaacaagccattgcacttggtct 201  Q
    |  |||||||||| | ||||||||||||||||    
T  28901872 gcgtggtttcaactacccattgcacttggtct 28901903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 205
Target Start/End: Original strand, 56054894 - 56055037
Alignment:
Q  60 tggcccccgcgtcagaattcaacatgtttaattctttcatctactctcacctccacatca-nnnnnnnnaccattttcaacacccacatgcaatggtttc 158  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||           |||||||||   ||||||||||| |||||    
T  56054894 tggcccccacgtcagaattcaacatgtttaattctttcatctactctcacctccgcatcatttttttttttcattttcaa---ccacatgcaatagtttc 56054990  T
Q  159 aacatgttgaagtttggtttcaacaagccattgcacttggtctaagg 205  Q
    |||||| ||||| ||||||||||||| ||||||||| ||||||||||    
T  56054991 aacatgctgaagcttggtttcaacaacccattgcacatggtctaagg 56055037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 23539100 - 23538996
Alignment:
Q  56 cacgtggcccccgcgtcagaattcaacatgtttaattctttcatctactctcacctccacatcannnnnnnnaccattttcaacacccacatgcaatggt 155  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||          ||||||||||||||||||||||||||    
T  23539100 cacgtggcccccgcgtcagaattcaacatgtttaattctttcttgtactctcacctccgcatcatttttttt--cattttcaacacccacatgcaatggt 23539003  T
Q  156 ttcaaca 162  Q
    |||||||    
T  23539002 ttcaaca 23538996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 63 - 194
Target Start/End: Complemental strand, 48506015 - 48505884
Alignment:
Q  63 cccccgcgtcagaattcaacatgtttaattctttcatctactctcacctccacatcannnnnnnnaccattttcaaca-cccacatgcaatggtttcaac 161  Q
    ||||||||||||||||||| |||||||||   |||||||||||||||||||||||||         |||||||||||| ||| | |||||||| ||||||    
T  48506015 cccccgcgtcagaattcaaaatgtttaatatattcatctactctcacctccacatcatttttccc-ccattttcaacacccctcttgcaatggattcaac 48505917  T
Q  162 atgttgaagtttggtttcaacaagccattgcac 194  Q
    ||||||||| |||| |||||||  |||||||||    
T  48505916 atgttgaaggttggattcaacaccccattgcac 48505884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 28901603 - 28901641
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaac 51  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  28901603 aatattaagatgataaaaatccaagcagccaatcgaaac 28901641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 48506177 - 48506140
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaa 50  Q
    |||||||||||||||||||||||||||| |||||||||    
T  48506177 aatattaagatgataaaaatccaagcagccaatcgaaa 48506140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 56054736 - 56054773
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaa 50  Q
    |||||||||||||||||||||||||||| |||||||||    
T  56054736 aatattaagatgataaaaatccaagcagccaatcgaaa 56054773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 38174033 - 38174075
Alignment:
Q  15 tattaagatgataaaaatccaagcagtcaatcgaaacaagtca 57  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||    
T  38174033 tattaagaagataaaaatccaagcagtcaatcaaaacatgtca 38174075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 48403487 - 48403441
Alignment:
Q  15 tattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtg 61  Q
    |||||||| ||||||||||||||||| |||||| |||||| ||||||    
T  48403487 tattaagaagataaaaatccaagcagccaatcgtaacaagccacgtg 48403441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 23539254 - 23539206
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtg 61  Q
    ||||||||||||||||||||| |||||| |||| ||||| || ||||||    
T  23539254 aatattaagatgataaaaatctaagcagccaattgaaaccagccacgtg 23539206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 31336119 - 31336071
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtg 61  Q
    |||||||| ||||||||||| ||||||| |||||||||| || ||||||    
T  31336119 aatattaaaatgataaaaattcaagcagccaatcgaaaccagccacgtg 31336071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 12271880 - 12271739
Alignment:
Q  63 cccccgcgtcagaattcaacatgtttaattctttcatctactctcacctccacatcannnnnnnnaccattttcaaca-cccacatgcaatggtttcaac 161  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||         |||||||||||| ||| | |||||||| ||||||    
T  12271880 cccccgcgtcagaattcaacatgtttaatatattcatctactctcacctccacatcatttttccc-ccattttcaacacccctcttgcaatggattcaac 12271782  T
Q  162 atgttgaagtttggtttcaacaagccattgcacttggtctaag 204  Q
    ||||||||| |||| |||||||  ||||||||| | |||||||    
T  12271781 atgttgaaggttggattcaacaccccattgcacatagtctaag 12271739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 13497756 - 13497796
Alignment:
Q  11 agaatattaagatgataaaaatccaagcagtcaatcgaaac 51  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  13497756 agaatattaagatgataaaaatccaagcagccaatcgaaac 13497796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 12272042 - 12272005
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaa 50  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  12272042 aatattaagatgataaaaatccaagcagtcaattgaaa 12272005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 7511114 - 7511047
Alignment:
Q  133 tttcaacacccacatgcaatggtttcaacatgttgaagtttggtttcaacaagccattgcacttggtct 201  Q
    ||||||||||||||| |||||||| ||||||||||||| ||   |||||| | ||||||||||||||||    
T  7511114 tttcaacacccacat-caatggttccaacatgttgaagcttccattcaactatccattgcacttggtct 7511047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 7511340 - 7511302
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaac 51  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  7511340 aatattaagatgataaaaatccaagtagccaatcgaaac 7511302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 13497989 - 13498059
Alignment:
Q  133 tttcaacacccacatgcaatggtttcaacatgttgaagtttggtttcaacaagccattgcacttggtctaa 203  Q
    ||||||||||||  | |||||||||||||||||| ||  |||  |||||||| |||||||||||| |||||    
T  13497989 tttcaacacccatctccaatggtttcaacatgtttaaacttgcattcaacaacccattgcacttgatctaa 13498059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 31129034 - 31129002
Alignment:
Q  15 tattaagatgataaaaatccaagcagtcaatcg 47  Q
    |||||||||||||||||||||||||| ||||||    
T  31129034 tattaagatgataaaaatccaagcagccaatcg 31129002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 194
Target Start/End: Original strand, 9118476 - 9118607
Alignment:
Q  63 cccccgcgtcagaattcaacatgtttaattctttcatctactctcacctccacatcannnnnnnnaccattttcaaca-cccacatgcaatggtttcaac 161  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||         |||||||||||| ||| | |||||||| ||||||    
T  9118476 cccccgcgtcagaattcaacatgtttaatatattcatctactctcacctccacatcatttttccc-ccattttcaacacccctcttgcaatggattcaac 9118574  T
Q  162 atgttgaagtttggtttcaacaagccattgcac 194  Q
    ||||||||| |||| |||||||  |||||||||    
T  9118575 atgttgaaggttggattcaacaccccattgcac 9118607  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 1072482 - 1072341
Alignment:
Q  63 cccccgcgtcagaattcaacatgtttaattctttcatctactctcacctccacatcannnnnnnnaccattttcaaca-cccacatgcaatggtttcaac 161  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||| ||||||         |||||||||||| ||| | |||||||| ||||||    
T  1072482 cccccgcgtcagaattcaacatgtttaatatattcatctactctcacctctacatcattttcccc-ccattttcaacacccctcttgcaatggattcaac 1072384  T
Q  162 atgttgaagtttggtttcaacaagccattgcacttggtctaag 204  Q
    ||||||||| |||| |||||||  ||||||||| | |||||||    
T  1072383 atgttgaaggttggattcaacaccccattgcacatagtctaag 1072341  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 1072644 - 1072607
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaa 50  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  1072644 aatattaagatgataaaaatccaagcagtcaatggaaa 1072607  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 9118314 - 9118351
Alignment:
Q  13 aatattaagatgataaaaatccaagcagtcaatcgaaa 50  Q
    |||||||||||||||||||||||||||| |||||||||    
T  9118314 aatattaagatgataaaaatccaagcagccaatcgaaa 9118351  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 16441803 - 16441754
Alignment:
Q  70 gtcagaattcaacatgtttaattctttcatctactctcacctccacatca 119  Q
    |||||| |||||||||||||| |||||||||| ||||||| |||||||||    
T  16441803 gtcagatttcaacatgtttaactctttcatctcctctcacttccacatca 16441754  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 7762770 - 7762723
Alignment:
Q  15 tattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtgg 62  Q
    |||||||| ||||||||| |||||||||||||| |||||| |||||||    
T  7762770 tattaagaagataaaaattcaagcagtcaatcgtaacaagccacgtgg 7762723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 13151192 - 13151156
Alignment:
Q  15 tattaagatgataaaaatccaagcagtcaatcgaaac 51  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  13151192 tattaagatgataaaaatctaagcagccaatcgaaac 13151156  T

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Target: scaffold0021 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 109804 - 109758
Alignment:
Q  15 tattaagatgataaaaatccaagcagtcaatcgaaacaagtcacgtg 61  Q
    |||||||| ||||||||||||||||| |||||| |||||| ||||||    
T  109804 tattaagaagataaaaatccaagcagccaatcgtaacaagccacgtg 109758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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