View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1169_low_5 (Length: 578)

Name: NF1169_low_5
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1169_low_5
NF1169_low_5
[»] chr6 (7 HSPs)
chr6 (16-548)||(341310-341842)
chr6 (16-548)||(337272-337804)
chr6 (16-324)||(333018-333326)
chr6 (205-548)||(377212-377558)
chr6 (220-497)||(355654-355931)
chr6 (208-347)||(347145-347284)
chr6 (389-497)||(346995-347103)
[»] chr7 (2 HSPs)
chr7 (298-347)||(12176106-12176155)
chr7 (313-347)||(12164581-12164615)
[»] chr8 (2 HSPs)
chr8 (401-459)||(36668318-36668376)
chr8 (298-347)||(36668436-36668485)
[»] chr1 (2 HSPs)
chr1 (394-458)||(12963809-12963873)
chr1 (394-446)||(19279102-19279154)
[»] chr4 (1 HSPs)
chr4 (301-347)||(3321385-3321431)


Alignment Details
Target: chr6 (Bit Score: 496; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 16 - 548
Target Start/End: Original strand, 341310 - 341842
Alignment:
Q  16 atgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatg 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341310 atgactgaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatg 341409  T
Q  116 ctgaaagtgatgatgctcatcatgttgatatgctaacggcgttgattagagaagnnnnnnncaagggtagtgaaagtgaagcacttggtgacaagtttct 215  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  341410 ctgaaagtgatgatgctcatcatgttgatatgttaacggcattgattagagaagaaaaaaacaagggtagtgaaagtgaagcacttggtgacaagtttct 341509  T
Q  216 aagagatgctgcattcaatctctttgtagctgggagagataccataacttctgcgcttacatggctattttatcttgttgctacacaccctttagtggaa 315  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341510 aagagatgctgcattcaatctctttgtagctggaagagataccataacttctgcgcttacatggctattttatcttgttgctacacaccctttagtggaa 341609  T
Q  316 gccaagattcttgaagagatcaaagaaaatttcggatacaaagagaagccttggattttaagtgttgatgatgtgaaaaagcttgtttatcttcatggtg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341610 gccaagattcttgaagagatcaaagaaaatttcggatacaaagagaagccttggattttaagtgttgatgatgtgaaaaagcttgtttatcttcatggtg 341709  T
Q  416 ctatatgtgaggcattaaggctttttccaccaataccttttgagagaaaggaagcggttaaacccgatatacttccaagtggtcatcatgtttatccgaa 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341710 ctatatgtgaggcattaaggctttttccaccaataccttttgagagaaaggaagcggttaaacccgatatacttccaagtggtcatcatgtttatccgaa 341809  T
Q  516 taatatgatattgttttctttgtatgcaatggg 548  Q
    |||||||||||||||||||||||||||||||||    
T  341810 taatatgatattgttttctttgtatgcaatggg 341842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 548
Target Start/End: Original strand, 337272 - 337804
Alignment:
Q  16 atgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatg 115  Q
    ||||| || |||||||| ||||||||||||||||| | ||||||||| ||||||||  |||||||||||||||||||  |||||||||||||||| ||||    
T  337272 atgactgaagcatgcaaagtatttgatcaattcctatattcgtgtatagcttcaaaatgcgaagagctaaagaaaaacggtaacaaaaatgaaattaatg 337371  T
Q  116 ctgaaagtgatgatgctcatcatgttgatatgctaacggcgttgattagagaagnnnnnnncaagggtagtgaaagtgaagcacttggtgacaagtttct 215  Q
     | ||||| |||||||||||||||||||| |||||||||| || ||||||||||       ||||||||||||||||||| || ||||| ||||||||||    
T  337372 gtcaaagtaatgatgctcatcatgttgatttgctaacggcattaattagagaagaaaatagcaagggtagtgaaagtgaatcaattggtaacaagtttct 337471  T
Q  216 aagagatgctgcattcaatctctttgtagctgggagagataccataacttctgcgcttacatggctattttatcttgttgctacacaccctttagtggaa 315  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||| ||||||    
T  337472 aagagatgctgcattcaatctctttgtagcggggagagataccataacttccgcgcttacatggttattttatcttgtcgctacacatcctttggtggaa 337571  T
Q  316 gccaagattcttgaagagatcaaagaaaatttcggatacaaagagaagccttggattttaagtgttgatgatgtgaaaaagcttgtttatcttcatggtg 415  Q
    ||||||||| |||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |    
T  337572 gccaagattgttgaagagataaaagaaaattttggacacaaagagaagccttggattttaagtgttgatgaggtgaaaaagcttgtttatcttcacggcg 337671  T
Q  416 ctatatgtgaggcattaaggctttttccaccaataccttttgagagaaaggaagcggttaaacccgatatacttccaagtggtcatcatgtttatccgaa 515  Q
    ||||||||||||| |||||||||||||| || |||||||||||||||||| ||||  || || ||||||||||||||||||||||||||||||  |||||    
T  337672 ctatatgtgaggcgttaaggctttttccgcctataccttttgagagaaagcaagcaattgaagccgatatacttccaagtggtcatcatgttttcccgaa 337771  T
Q  516 taatatgatattgttttctttgtatgcaatggg 548  Q
    ||| ||| |||| |||||||||||| |||||||    
T  337772 taagatggtatttttttctttgtattcaatggg 337804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 333018 - 333326
Alignment:
Q  16 atgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatg 115  Q
    ||||| ||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  333018 atgaccgaggcatgcaaagtatttgataaattcctattttcgtgtatagcttcaaagcgcgaagagctaaagcaaaattgtaacaaaaatgaaatcaatg 333117  T
Q  116 ctgaaagtgatgatgctcatcatgttgatatgctaacggcgttgattagagaagnnnnnnncaagggtagtgaaagtgaagcacttggtgacaagtttct 215  Q
     ||||||||| |||||||||||||||||| |||| ||| |||||||||||||||        |||| ||||||||||||| || ||   |||||||||||    
T  333118 ttgaaagtgacgatgctcatcatgttgatttgcttacgacgttgattagagaagaaaaaaataaggatagtgaaagtgaatcaattatcgacaagtttct 333217  T
Q  216 aagagatgctgcattcaatctctttgtagctgggagagataccataacttctgcgcttacatggctattttatcttgttgctacacaccctttagtggaa 315  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||| |||||||| ||||| ||||||    
T  333218 aagagatgctgcattcaatctctttgtagcggggagagataccataacttccgcccttacatggttattttatcttgtcgctacacatcctttggtggaa 333317  T
Q  316 gccaagatt 324  Q
    |||||||||    
T  333318 gccaagatt 333326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 205 - 548
Target Start/End: Original strand, 377212 - 377558
Alignment:
Q  205 gacaagtttctaagagatgctgcattcaatctctttgtagctgggagagataccataacttctgcgcttacatggctattttatcttgttgctacacacc 304  Q
    ||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||| |||||||||||| |||||||||| ||||||||||| |    
T  377212 gacaagtttctaagagatgctgctttcaatctctttgtagccggaagagatactataacttcagcgcttacatggttattttatctcgttgctacacatc 377311  T
Q  305 ctttagtggaagccaagattcttgaagagatcaaagaaaatttcggatacaaagaga---agccttggattttaagtgttgatgatgtgaaaaagcttgt 401  Q
    ||||||| ||| ||||||||||||||||||| |||||| |||| |||  ||   | |   | |    ||  ||| | |||||||| ||||| ||||| ||    
T  377312 ctttagtagaaaccaagattcttgaagagattaaagaacattttggaaccattaatattgatcaaaagaagttaggggttgatgaagtgaagaagctagt 377411  T
Q  402 ttatcttcatggtgctatatgtgaggcattaaggctttttccaccaataccttttgagagaaaggaagcggttaaacccgatatacttccaagtggtcat 501  Q
    |||||||||||||||||||||||||||  ||||||||||||| || ||||| |||||| | ||| ||||  |||||   ||| |||||||||||||||||    
T  377412 ttatcttcatggtgctatatgtgaggctataaggctttttcctcctataccctttgagcgcaagaaagcaattaaaggtgatgtacttccaagtggtcat 377511  T
Q  502 catgtttatccgaataatatgatattgttttctttgtatgcaatggg 548  Q
      | || |||| ||||  || ||||| |||||||||||| |||||||    
T  377512 attattaatccaaatacaattatattattttctttgtattcaatggg 377558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 220 - 497
Target Start/End: Complemental strand, 355931 - 355654
Alignment:
Q  220 gatgctgcattcaatctctttgtagctgggagagataccataacttctgcgcttacatggctattttatcttgttgctacacaccctttagtggaagcca 319  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || |||||  |||||||||||||||||||||| || |    
T  355931 gatgttgcattcaatctctttgtagcggggagagatactataacttcagcgcttacatggctcttctatctcattgctacacaccctttagtggaggcta 355832  T
Q  320 agattcttgaagagatcaaagaaaatttcggatacaaagagaagccttggattttaagtgttgatgatgtgaaaaagcttgtttatcttcatggtgctat 419  Q
    |||||||||| ||||| ||||||||||| ||   ||   | |       ||  ||| |  |||||||  |||||||||| ||||||||||||||||||||    
T  355831 agattcttgaggagattaaagaaaattttgggaccatcaatattgaaaagaaattagggattgatgagttgaaaaagctagtttatcttcatggtgctat 355732  T
Q  420 atgtgaggcattaaggctttttccaccaataccttttgagagaaaggaagcggttaaacccgatatacttccaagtgg 497  Q
    |||||| ||  ||||||||||||| |||||||| |||||||||||| ||||  |||||   |||||||||||||||||    
T  355731 atgtgaagctctaaggctttttcctccaataccctttgagagaaagcaagcaattaaaggtgatatacttccaagtgg 355654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 208 - 347
Target Start/End: Complemental strand, 347284 - 347145
Alignment:
Q  208 aagtttctaagagatgctgcattcaatctctttgtagctgggagagataccataacttctgcgcttacatggctattttatcttgttgctacacaccctt 307  Q
    ||||||||||||||||  ||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| || |||||| |||||||||||||||    
T  347284 aagtttctaagagatgtcgcattcaatctttttgtagccgggagagatactataacttcagcgcttacatggcttttatatcttattgctacacaccctt 347185  T
Q  308 tagtggaagccaagattcttgaagagatcaaagaaaattt 347  Q
    ||||||| || |||||||||||  |||| |||||||||||    
T  347184 tagtggaggctaagattcttgagcagattaaagaaaattt 347145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 389 - 497
Target Start/End: Complemental strand, 347103 - 346995
Alignment:
Q  389 tgaaaaagcttgtttatcttcatggtgctatatgtgaggcattaaggctttttccaccaataccttttgagagaaaggaagcggttaaacccgatatact 488  Q
    |||||||||| |||||||||||||||||||||||||| ||  ||||||||||||| |||||||| |||||||||||| ||||  |||||   ||||||||    
T  347103 tgaaaaagctagtttatcttcatggtgctatatgtgaagctctaaggctttttcctccaataccctttgagagaaagcaagcaattaaaggtgatatact 347004  T
Q  489 tccaagtgg 497  Q
    |||||||||    
T  347003 tccaagtgg 346995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 12176155 - 12176106
Alignment:
Q  298 acacaccctttagtggaagccaagattcttgaagagatcaaagaaaattt 347  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||    
T  12176155 acacacccttttgttgaagccaagattcttgaagagatcaaagaaaattt 12176106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 12164615 - 12164581
Alignment:
Q  313 gaagccaagattcttgaagagatcaaagaaaattt 347  Q
    ||||| |||||||||||||||||||||||||||||    
T  12164615 gaagctaagattcttgaagagatcaaagaaaattt 12164581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 459
Target Start/End: Complemental strand, 36668376 - 36668318
Alignment:
Q  401 tttatcttcatggtgctatatgtgaggcattaaggctttttccaccaataccttttgag 459  Q
    ||||||| ||||| ||| ||||||| || |||||||||| |||||||||||||||||||    
T  36668376 tttatctacatggagctttatgtgaagccttaaggctttatccaccaataccttttgag 36668318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 36668485 - 36668436
Alignment:
Q  298 acacaccctttagtggaagccaagattcttgaagagatcaaagaaaattt 347  Q
    ||||||||||| || ||||||||||||||||||||| | | |||||||||    
T  36668485 acacacccttttgttgaagccaagattcttgaagaggtgagagaaaattt 36668436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 458
Target Start/End: Original strand, 12963809 - 12963873
Alignment:
Q  394 aagcttgtttatcttcatggtgctatatgtgaggcattaaggctttttccaccaataccttttga 458  Q
    |||||||||||||||||||| ||||| ||||| || |||||||||| ||| || ||||| |||||    
T  12963809 aagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttga 12963873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 19279102 - 19279154
Alignment:
Q  394 aagcttgtttatcttcatggtgctatatgtgaggcattaaggctttttccacc 446  Q
    ||||| |||||||||||||| ||||||||||| || |||||||||| ||||||    
T  19279102 aagctagtttatcttcatggagctatatgtgaagccttaaggctttatccacc 19279154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 3321385 - 3321431
Alignment:
Q  301 caccctttagtggaagccaagattcttgaagagatcaaagaaaattt 347  Q
    |||||||| || ||||| ||||||||||||||||| |||||||||||    
T  3321385 cacccttttgttgaagctaagattcttgaagagattaaagaaaattt 3321431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University