View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_52 (Length: 301)
Name: NF1169_low_52
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_52 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 51 - 301
Target Start/End: Original strand, 37531511 - 37531761
Alignment:
| Q |
51 |
aacctgtgtgaaacctctaacgcggaaaaggccgtgtaaacttccagacagttcatatctataaacagtacctaattctgctaccctaacaggaaaatcc |
150 |
Q |
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| T |
37531511 |
aacctgtgtgaaacctctaacgcggaaaaggccgtgtaaacttccagacagttcatatctataaacagtacctaattctgctaccctaacaggaaaatcc |
37531610 |
T |
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| Q |
151 |
cgataggaatgacgcttccttttgtataccaaaatatgataaggacaattcattggtcgaagttgataatgctcatcttcgatgctcatctgatcataca |
250 |
Q |
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| T |
37531611 |
cgataggaatgacgcttccttttgtataccaaaatatgataaggacaattcattggccgaagttgataacgctcatcttcaatgctcatctgatcataca |
37531710 |
T |
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| Q |
251 |
tattttccttgtagaagtccaaatgaccactgatcttccaaagatcagctt |
301 |
Q |
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| T |
37531711 |
tattttccttgtagaagtccaaatgaccactgatcttccaaagatcagctt |
37531761 |
T |
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