View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1169_low_59 (Length: 266)

Name: NF1169_low_59
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1169_low_59
NF1169_low_59
[»] chr2 (3 HSPs)
chr2 (30-264)||(39693870-39694106)
chr2 (146-210)||(2336696-2336762)
chr2 (157-203)||(2323694-2323740)
[»] chr4 (6 HSPs)
chr4 (156-210)||(29802613-29802667)
chr4 (104-202)||(31957580-31957681)
chr4 (157-207)||(23210827-23210876)
chr4 (148-203)||(30788297-30788354)
chr4 (156-197)||(2041166-2041207)
chr4 (177-206)||(50400019-50400048)
[»] chr7 (2 HSPs)
chr7 (156-203)||(23714892-23714939)
chr7 (159-210)||(7192787-7192838)
[»] chr1 (3 HSPs)
chr1 (157-202)||(7373363-7373408)
chr1 (157-190)||(8240396-8240429)
chr1 (159-211)||(47493819-47493871)
[»] chr8 (2 HSPs)
chr8 (164-210)||(11970314-11970360)
chr8 (156-210)||(40991825-40991879)
[»] chr3 (1 HSPs)
chr3 (156-210)||(41857496-41857550)
[»] chr6 (2 HSPs)
chr6 (174-211)||(10498844-10498881)
chr6 (157-210)||(29028162-29028215)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 39694106 - 39693870
Alignment:
Q  30 ttctccaccaccaaaactatcacaagatgcatcccctgttagaaaacagttaggcaatgttgtttgttagggtttgttgagtcatgagtggagttcagag 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39694106 ttctccaccaccaaaactatcacaagatgcatcccctgttagaaaacagttaggcaatgttgtttgttagggtttgttgagtcatgagtggagttcagag 39694007  T
Q  130 gatcatacacactaggtcagagcaaccacaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttatactctcacttataaataac 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  39694006 gatcatacacactaggtcagagcaaccacaagtgagttggacaccacatcttaacccaaaatcttaaggcattgagtttatgctctcacttataaataac 39693907  T
Q  230 gtgagatttttaact--cacttgccacgcattagggt 264  Q
    |||||||||||||||  ||||||| ||||||||||||    
T  39693906 gtgagatttttaactcacacttgctacgcattagggt 39693870  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 2336762 - 2336696
Alignment:
Q  146 tcagagcaaccaca--agtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 210  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||| |||||| |||||    
T  2336762 tcagagcaaccacacaagtgagttggacaccacatcttaacccaaaatcttaaggcattgaatttat 2336696  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 2323740 - 2323694
Alignment:
Q  157 acaagtgagttggacaccatatcttaacccaaaatcttaagacattg 203  Q
    ||||||||||||||||||| ||||||||| |||| |||||| |||||    
T  2323740 acaagtgagttggacaccacatcttaacctaaaaccttaaggcattg 2323694  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 29802667 - 29802613
Alignment:
Q  156 cacaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 210  Q
    ||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||    
T  29802667 cacaagtgagttggacaccatatcttaacacaaaaccttaaggcattgggtttat 29802613  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 31957681 - 31957580
Alignment:
Q  104 tgttgagtcatgagtggagttcagaggatcatacacactaggtca-gagcaaccac--aagtgagttggacaccatatcttaacccaaaatcttaagaca 200  Q
    ||||| |||||||| |||| |||| ||||||| | ||  ||| || ||||||||||  ||||||||||||||||| |||||||||||||| |||||| ||    
T  31957681 tgttgggtcatgaggggagctcaggggatcatcctcatcagggcaagagcaaccacgcaagtgagttggacaccacatcttaacccaaaaccttaaggca 31957582  T
Q  201 tt 202  Q
    ||    
T  31957581 tt 31957580  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 23210827 - 23210876
Alignment:
Q  157 acaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtt 207  Q
    |||||||||||||||| || ||||||| || ||||||||||||||||||||    
T  23210827 acaagtgagttggacatcacatcttaa-cctaaatcttaagacattgagtt 23210876  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 30788354 - 30788297
Alignment:
Q  148 agagcaaccac--aagtgagttggacaccatatcttaacccaaaatcttaagacattg 203  Q
    |||||||||||  || ||||||| |||||| |||||||||||||| ||||||||||||    
T  30788354 agagcaaccactcaattgagttgaacaccacatcttaacccaaaaccttaagacattg 30788297  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 2041207 - 2041166
Alignment:
Q  156 cacaagtgagttggacaccatatcttaacccaaaatcttaag 197  Q
    |||||||||||||||||||| ||||| |||||||| ||||||    
T  2041207 cacaagtgagttggacaccacatcttcacccaaaaccttaag 2041166  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 50400048 - 50400019
Alignment:
Q  177 atcttaacccaaaatcttaagacattgagt 206  Q
    ||||||||||||||||||||||||||||||    
T  50400048 atcttaacccaaaatcttaagacattgagt 50400019  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 23714892 - 23714939
Alignment:
Q  156 cacaagtgagttggacaccatatcttaacccaaaatcttaagacattg 203  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  23714892 cacaagtgagttggacaccacatcttcacccaaaatcttaaggcattg 23714939  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 7192838 - 7192787
Alignment:
Q  159 aagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 210  Q
    |||||||||||||| || ||||| || ||||| |||||||||||||||||||    
T  7192838 aagtgagttggacatcacatctttactcaaaaccttaagacattgagtttat 7192787  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 7373408 - 7373363
Alignment:
Q  157 acaagtgagttggacaccatatcttaacccaaaatcttaagacatt 202  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  7373408 acaagtgagttggacaccacatcttaaccaaaaattttaagacatt 7373363  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 8240396 - 8240429
Alignment:
Q  157 acaagtgagttggacaccatatcttaacccaaaa 190  Q
    ||||||||||||||||||| ||||||||||||||    
T  8240396 acaagtgagttggacaccacatcttaacccaaaa 8240429  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 47493871 - 47493819
Alignment:
Q  159 aagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttata 211  Q
    |||||||||||||   |||||||||| |||||| |||||| ||||||||||||    
T  47493871 aagtgagttggacgtaatatcttaactcaaaattttaagatattgagtttata 47493819  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 11970360 - 11970314
Alignment:
Q  164 agttggacaccatatcttaacccaaaatcttaagacattgagtttat 210  Q
    |||||| ||||| ||||||||||||||||| ||| ||||||||||||    
T  11970360 agttgggcaccacatcttaacccaaaatctaaaggcattgagtttat 11970314  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 40991879 - 40991825
Alignment:
Q  156 cacaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 210  Q
    |||| ||||||||||||||| |||||||||||||| ||| || ||||| ||||||    
T  40991879 cacaggtgagttggacaccacatcttaacccaaaaccttgaggcattgggtttat 40991825  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 41857550 - 41857496
Alignment:
Q  156 cacaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 210  Q
    ||||||||||||| ||| || ||||||||||||||  ||||| ||||||||||||    
T  41857550 cacaagtgagttgaacatcacatcttaacccaaaactttaagtcattgagtttat 41857496  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 10498844 - 10498881
Alignment:
Q  174 catatcttaacccaaaatcttaagacattgagtttata 211  Q
    |||||||||||||||||  |||||||||||||||||||    
T  10498844 catatcttaacccaaaactttaagacattgagtttata 10498881  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 29028215 - 29028162
Alignment:
Q  157 acaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 210  Q
    |||||| |||||||||||| |||||||| |||||  ||| ||||||||||||||    
T  29028215 acaagtaagttggacaccacatcttaactcaaaacattaggacattgagtttat 29028162  T

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