View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_6 (Length: 576)
Name: NF1169_low_6
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 13 - 547
Target Start/End: Original strand, 50787969 - 50788502
Alignment:
| Q |
13 |
aatatagagagagttgaatagtttgattaagtcgtaacgttatcatgaaaaggagcacctgcaagggcacagtgtactgaacacaagtagccaaccaaga |
112 |
Q |
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| T |
50787969 |
aatatagagagagttgaatagtt-gattaagtcgtaacgttatcatgaaaaggagcacctgcaagggcacagtgtactgaacacaagtagccaaccaaga |
50788067 |
T |
|
| Q |
113 |
agaaaacaaagatcgtaacaacaccacacaagttcataacatagcaacacgtgaataggatgaaaaagaaatgggctcaaaaatgaagcactgtttccta |
212 |
Q |
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| T |
50788068 |
agaaaacaaagatcgtaacaacaccacacaagttcataacatagcaacacgtgaataggatgaaaaagaaatgggctgaaaaatgaagcactgtttccta |
50788167 |
T |
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| Q |
213 |
ggtaaaatcagaaaaaggtgaagtgttttttccataatattctactcttatgctttttgacaaggaaagagaaagattgtagtataattataaggtgtga |
312 |
Q |
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| T |
50788168 |
ggtaaaatcagaaaaaggtgaagtgttttttccataatattctactcttatgctttttgacaaggaaagagaaagattgtagtataattataaggtgtga |
50788267 |
T |
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| Q |
313 |
attccttcctccgtgtgtgttttttgtttgtgaagaaagttttcagagatcattcacgtgggtggatgtttccatccatttcatttgcccacaccgtact |
412 |
Q |
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| T |
50788268 |
attccttcctccgtgtgtgttttttgtttgtgaagaaagttttcagagatcattcacgtgggtggatgtttccatccatttcatttgcccacaccgtact |
50788367 |
T |
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| Q |
413 |
aacaaatattgaaacatgacaaaccaaaccataccaaaaccatacaatcttaatcaaatcaatttctattactatgaaatgtnnnnnnnnnnnntgtatt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
50788368 |
aacaaatattgaaacatgacaaaccaaaccataccaaaaccatacaatcttaatcaaatcaatttctattgctatgaaatgtaaaaataaaaaatgtatt |
50788467 |
T |
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| Q |
513 |
tattaccaacccaattcactagataatgaagaaag |
547 |
Q |
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| T |
50788468 |
tattaccaacccaattcactagataatgaagaaag |
50788502 |
T |
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