View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_68 (Length: 252)
Name: NF1169_low_68
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37832238 - 37832476
Alignment:
| Q |
1 |
agaaggttttgttataaattacaatcttcttgcaaaccgactctgcctcaactccaatgtcttcactggtttgggtactaaaatcaaccagggctagctc |
100 |
Q |
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| T |
37832238 |
agaaggttttgttataaattacaatcttcttgcaaaccgactctgcctcaactccaatgtcttcactggtttgggtactaaaatcaaccagggctagctc |
37832337 |
T |
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| Q |
101 |
catatttcttttatgtaaaatatatcaccctttattccaatcccaatagcacgcataatgcgagttgaaggtctcctccgtatgttgagccaaattaacc |
200 |
Q |
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| T |
37832338 |
catatttcttttatgtaaaatatatcaccctttattccaatcccaatagcacgcataatgcgagttgaaggtctcctccgtatgttgagccaaattaacc |
37832437 |
T |
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| Q |
201 |
ctaaagtgtttgaacattcaattcaatacatcgcaacag |
239 |
Q |
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| T |
37832438 |
ctaaagtgtttgaacattcaattcaatacatcgcaacag |
37832476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 37831054 - 37830885
Alignment:
| Q |
7 |
ttttgttataaattacaatcttcttgcaaaccgactctgcctcaactccaatgt-cttcactggtttgggtactaaaatcaaccagggctagctccatat |
105 |
Q |
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| T |
37831054 |
ttttcttagaaattacaatcttcatgcaaaccgactctacctcaactccaatgttcttcactagtttgggtacttaaatcaatcagggctagctccatat |
37830955 |
T |
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| Q |
106 |
tt-cttttatgtaaaatatatcaccctttattccaatcccaatagcacgcataatgcgagttgaaggtct |
174 |
Q |
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| T |
37830954 |
tttcttttatgtagaatatagcactctttattccaatcccaatagcacgcataatgtgagttgaaggtct |
37830885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 22535046 - 22535207
Alignment:
| Q |
12 |
ttataaattacaatcttcttgcaaaccgactctgcctcaactccaatgtcttcactggtttgggtactaaaatcaaccagggctagctccatatttc-tt |
110 |
Q |
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||||| ||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| || |
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| T |
22535046 |
ttatacattacaatcttctggcaagccaactctgcctcaactccaatgtcttcactagtttgggtacttaaatcaatcagggctagctccatatttcttt |
22535145 |
T |
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| Q |
111 |
ttatgtaaaatatatcaccctttattccaatcccaatagcacgcataatgcgagttgaaggt |
172 |
Q |
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| T |
22535146 |
ttatgtacaatataccactctttattccaatcccaatagcacaaataatgcgagttgaaggt |
22535207 |
T |
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