View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_69 (Length: 251)
Name: NF1169_low_69
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_69 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 43 - 251
Target Start/End: Original strand, 14545615 - 14545823
Alignment:
| Q |
43 |
gaagaaaggtaaaccctaatacatccacatcacacagatacacacacataccctctttctatgcgtgtgcagnnnnnnnnnnnnnggtcaaattttgtgt |
142 |
Q |
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| T |
14545615 |
gaagaaaggtaaaccctaatacatccacatcacacagatatacacacataccctctttctatgcgtgtgcagtttttttgtttttggtcaaattttgtgt |
14545714 |
T |
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| Q |
143 |
gcagttataacgtgagttttatggaatgcttttcagatttcactgttaaaccgtaatgtaatctgtgatagtttgatattgttataagaaaagtttgtgg |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14545715 |
tcagttataacgtgagttttatggaatgcttttcagatttcactgttaaaccgtaatgtaatctgtgatagtttgattttgttataagaaaagtttgtgg |
14545814 |
T |
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| Q |
243 |
tgtttggtc |
251 |
Q |
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| T |
14545815 |
tgtttggtc |
14545823 |
T |
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