View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_76 (Length: 246)
Name: NF1169_low_76
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_76 |
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| [»] scaffold0037 (3 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 103127 - 102975
Alignment:
| Q |
1 |
caacttcaatctttctaagatgatttcccgtacactcacacttgctgaaagaattgtcgacattcaagtaatgcttacattccattctccctgtgtaaca |
100 |
Q |
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| T |
103127 |
caacttcaatctttctaagatgatttcccttacacgcacacttgctgaaaggattgtcgacattcaagtaatgcttactttccattctccctgtgtaaca |
103028 |
T |
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| Q |
101 |
gaaaact---nnnnnnnnttacccaacaggtaaatagaggtcgagctcagtag |
150 |
Q |
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| T |
103027 |
gaaaactaaaaaaaaaaattacccaacaggtaaatagaggccgagctcagtag |
102975 |
T |
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Target: scaffold0037; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 32467 - 32572
Alignment:
| Q |
46 |
tgaaagaattgtcgacattcaagtaatgcttacattccattctccctgtgtaacagaaaact-nnnnnnnnttacccaacaggtaaatagaggtcgagct |
144 |
Q |
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|||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
32467 |
tgaaaggattgtcgacatacaagtaatgcttactttccattctccctgtgtaacagaaaactaaaaaaaaattacccaacaggtaaatagaggccgagct |
32566 |
T |
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| Q |
145 |
cagtag |
150 |
Q |
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|||||| |
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| T |
32567 |
cagtag |
32572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 32437 - 32465
Alignment:
| Q |
1 |
caacttcaatctttctaagatgatttccc |
29 |
Q |
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| T |
32437 |
caacttcaatctttctaagatgatttccc |
32465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 10427028 - 10427125
Alignment:
| Q |
1 |
caacttcaatctttctaagatgatttcccgtacactcacacttgctgaaagaattgtcgacattcaagtaatgcttacattccattctccctgtgtaa |
98 |
Q |
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| T |
10427028 |
caacttcaatctttctaagatgatttcccttacacacatacttgctgaaaggattgtcgacatacaagtaatgcttactttccattctccctgtgtaa |
10427125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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