View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_81 (Length: 234)
Name: NF1169_low_81
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_81 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 14064703 - 14064469
Alignment:
| Q |
1 |
tacaagtaagattagtatgacaagaaacacaataagtcctccactttcaaataataaccactcactctccatgtatggttagccataatctgatctgaca |
100 |
Q |
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| T |
14064703 |
tacaagtaagattagtatgacaaggaacacaataagtcctccactttcaaataataaccactcactctccatgtatggttagccataatctgatctgaca |
14064604 |
T |
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| Q |
101 |
aatttcctatatttatgcattcttctctttcttgtataaatcatttataacaattagcaatgctcttttaattccatacatgaaagaaagcgatgatgat |
200 |
Q |
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| T |
14064603 |
aatttcctatatttatgtattcttctctttcttgtataaatcatttgtaacaattagcaatgctcttttaattccatacatgaaagaaagcgatgatgat |
14064504 |
T |
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| Q |
201 |
gagatacaagaaaga-ttatacaagagcattgtat |
234 |
Q |
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| T |
14064503 |
gagatacaagaaagatttatacaagagcattgtat |
14064469 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 1070850 - 1070903
Alignment:
| Q |
100 |
aaatttcctatatttatgcattcttctctttcttgtataaatcatttataacaa |
153 |
Q |
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| T |
1070850 |
aaatttcctatctttatgcatttttctttttcttatataaatcatttttaacaa |
1070903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 5319614 - 5319526
Alignment:
| Q |
54 |
ataaccactcactctcc-atgtatggttagccataatctgatctgacaaatttcctatatttatgcattcttctctttcttgtataaat |
141 |
Q |
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| T |
5319614 |
ataatcactcactttcctatgtttgattagccattatttgatttgtcaaatatcccattttcatgcattcttctatttcttgtataaat |
5319526 |
T |
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