View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1169_low_83 (Length: 229)
Name: NF1169_low_83
Description: NF1169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1169_low_83 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 1651792 - 1651641
Alignment:
| Q |
84 |
cttatgaatatatcctactttagggtagtattaacatccttagctttacagattaagacattaatacagtttacttttgtatt------aagtacaataa |
177 |
Q |
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| T |
1651792 |
cttatggatatatcttactttagggtagtattaacatccttagctttacagattaagacattaatacagtttacttttgtattatccagaagtacaataa |
1651693 |
T |
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| Q |
178 |
aatagtaaaatctggaactcggtcaagaagcaagtaaagtctggccaagaat |
229 |
Q |
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| T |
1651692 |
aatagtaaaatctggaactcggccaagaagcaagtaaggtctggccaagaat |
1651641 |
T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 1651871 - 1651828
Alignment:
| Q |
6 |
agttaagccatctcagagcatttactttacaatcaataggaatg |
49 |
Q |
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| T |
1651871 |
agttaagccatctcagagtatttactttacaatcaataggaatg |
1651828 |
T |
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