View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_high_11 (Length: 527)
Name: NF11700_high_11
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 303 - 514
Target Start/End: Original strand, 44476167 - 44476370
Alignment:
| Q |
303 |
ttaattgctgtttgtttttaccagctaataactnnnnnnntaaacatatttctttataaaaaatgaatgatcaagttaaattaatatcttatttttaatt |
402 |
Q |
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| T |
44476167 |
ttaattgctgtttgtttttaccagctaataactaagaaa-taaacatatttctttataaaaaatgaatgatcaagttaaattaatatcttatttttaatt |
44476265 |
T |
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| Q |
403 |
atgagattaattaatatttgtctcttacactacacatatggacactaattttagttaattgcatagaactagaagaatatttttaatataacaaatttta |
502 |
Q |
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| T |
44476266 |
atgag----attaatatttgtctcttaaactacacatatggacactaattttagttaattgcatagaact---agaatatttttaatataacaaatttta |
44476358 |
T |
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| Q |
503 |
gtatcatctctg |
514 |
Q |
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|||||||||||| |
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| T |
44476359 |
gtatcatctctg |
44476370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 44475635 - 44475740
Alignment:
| Q |
16 |
tcaaataacacatattgctttcgataaaccgatgacaatgttgatttgctgtannnnnnnctcaatcaaaccattcagcccgtgtaattatttttcttca |
115 |
Q |
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| T |
44475635 |
tcaaataacacatattgctttcgataaaccgatgacaatgttgatttgctgtatttttttctcaatcaaaccattcagcccgtgtaattatttttcttca |
44475734 |
T |
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| Q |
116 |
actttg |
121 |
Q |
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| T |
44475735 |
actttg |
44475740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 44476026 - 44476105
Alignment:
| Q |
144 |
cttcaacttcaactcgttcattatattcctttaggt--tccctctggcgccgattattgtcaaaggtcaaatcttcaataa |
222 |
Q |
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| T |
44476026 |
cttcaacttcaactcgttcgttc-attcctttaggtgttccctctggcgccgattattgtcaaaggtcaaatcttcaataa |
44476105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 507
Target Start/End: Original strand, 44471698 - 44471777
Alignment:
| Q |
422 |
gtctcttacactacacatatggacactaattttagttaattgcatagaactagaagaatatttttaatataacaaattttagtatc |
507 |
Q |
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| T |
44471698 |
gtctcttacactacatata--gagactaattttagttaattgcatagaactataata----ttttaatataacaaattctagtatc |
44471777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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