View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11700_high_14 (Length: 411)

Name: NF11700_high_14
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11700_high_14
NF11700_high_14
[»] chr4 (1 HSPs)
chr4 (13-393)||(51034932-51035312)
[»] chr6 (2 HSPs)
chr6 (70-138)||(18700008-18700076)
chr6 (25-143)||(8890995-8891108)
[»] chr7 (2 HSPs)
chr7 (17-143)||(10208624-10208749)
chr7 (222-305)||(10208427-10208510)
[»] scaffold0164 (1 HSPs)
scaffold0164 (70-132)||(12205-12267)
[»] chr5 (2 HSPs)
chr5 (25-143)||(40883413-40883526)
chr5 (228-312)||(40883261-40883345)
[»] chr3 (2 HSPs)
chr3 (222-384)||(48118336-48118486)
chr3 (91-143)||(48118175-48118227)
[»] chr1 (4 HSPs)
chr1 (89-143)||(33358295-33358349)
chr1 (18-102)||(33358375-33358458)
chr1 (225-305)||(33357918-33357998)
chr1 (340-393)||(33357812-33357865)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 393
Target Start/End: Complemental strand, 51035312 - 51034932
Alignment:
Q  13 agacggctctcaatttctcaataaattcaaagataggactaaaactcaaaataaaaacaaagaaagtgcatgtaggatgtacgtgtttctaattccactc 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51035312 agacagctctcaatttctcaataaattcaaagataggactaaaactcaaaataaaaacaaagaaagtgcatgtaggatgtacgtgtttctaattccactc 51035213  T
Q  113 tttatgatcatcatttgtttcattttcatttcatggttctcacaatgttccatgannnnnnnnn-cttctcaactgtctttattgttgttctatcttcnn 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||       
T  51035212 tttatgatcatcatttgtttcattttcatttcatggttctcacaatgttccatgattttttttttcttctcaactgtctttattgttgttctatctt-tt 51035114  T
Q  212 nnnnnnnnnngttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacacctttaatc 311  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51035113 ttttttttttgttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttaca-ctttaatc 51035015  T
Q  312 tattggtttcaaaagtaactattatctgtctctcataatataaacctctttttcattcccc-ttttgttcttcttctctgcct 393  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  51035014 tattggtttcaaaagtaactattatctgtctctcatgatataaacctctttttcattcccctttttgttcttcttctctgcct 51034932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 18700076 - 18700008
Alignment:
Q  70 caaagaaagtgcatgtaggatgtacgtgtttctaattccactctttatgatcatcatttgtttcatttt 138  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18700076 caaagagagtgcatgtaggatgtacgtgtttctaattccactctttatgatcatcatttgtttcatttt 18700008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 8890995 - 8891108
Alignment:
Q  25 atttctcaataaattcaaagataggactaaaactcaaa--ataaaaacaaagaaagtgcatgtaggatgtacgtgtttctaattccactctttatgatca 122  Q
    ||||||||| ||||||||||| |  ||| |||||||||  ||||||||||||| |||||| |||       |||||||||||||||||||||||||||||    
T  8890995 atttctcaaaaaattcaaagacaatactcaaactcaaagaataaaaacaaagagagtgcacgta-------cgtgtttctaattccactctttatgatca 8891087  T
Q  123 tcatttgtttcattttcattt 143  Q
    |||||||||| ||||| ||||    
T  8891088 tcatttgtttaatttttattt 8891108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 10208749 - 10208624
Alignment:
Q  17 ggctctcaatttctcaataaattcaaagataggactaaaactcaaaata--aaaacaaagaaagtgcatgtaggatgtacgtgtttctaattccactctt 114  Q
    ||||||||||||||||||||||||||||| | |||| |||||||||| |  |||||||    ||||||||||  |||||||||||||||||||||||| |    
T  10208749 ggctctcaatttctcaataaattcaaagacatgactcaaactcaaaaaatgaaaacaag---agtgcatgtataatgtacgtgtttctaattccactcat 10208653  T
Q  115 tatgatcatcatttgtttcattttcattt 143  Q
    || ||||||||||||||||||||| ||||    
T  10208652 tacgatcatcatttgtttcatttttattt 10208624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 10208510 - 10208427
Alignment:
Q  222 gttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacacct 305  Q
    |||||||||||||||| |||||||||   ||| ||||| ||||||||| ||||| | ||||||| |||||||||||||||||||    
T  10208510 gttacactttattgttgttctctaaagcaatgattgctattaaaaattgagaatcaaacatttgcgatttgagcggttacacct 10208427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 12267 - 12205
Alignment:
Q  70 caaagaaagtgcatgtaggatgtacgtgtttctaattccactctttatgatcatcatttgttt 132  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12267 caaagagagtgcatgtaggatgtaagtgtttctaattccactctttatgatcatcatttgttt 12205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 40883526 - 40883413
Alignment:
Q  25 atttctcaataaattcaaagataggactaaaactcaaa--ataaaaacaaagaaagtgcatgtaggatgtacgtgtttctaattccactctttatgatca 122  Q
    ||||||||| ||||||||||| |  ||| |||||||||  ||||||| ||||| ||||||||||       |||||||||||||||||||||||||||||    
T  40883526 atttctcaaaaaattcaaagacaatactcaaactcaaagaataaaaataaagagagtgcatgta-------cgtgtttctaattccactctttatgatca 40883434  T
Q  123 tcatttgtttcattttcattt 143  Q
    |||||||||| ||||| ||||    
T  40883433 tcatttgtttaatttttattt 40883413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 312
Target Start/End: Complemental strand, 40883345 - 40883261
Alignment:
Q  228 ctttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacacctttaatct 312  Q
    |||||||||| |||||||||   ||||||||| ||||||||| ||||||  |||| |||||||||||| |||||| |||||||||    
T  40883345 ctttattgttgttctctaaagcaatggttgcttttaaaaattgagaatggaacatctgtgatttgagcagttacaactttaatct 40883261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 384
Target Start/End: Original strand, 48118336 - 48118486
Alignment:
Q  222 gttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacacctttaatctattggtttc 321  Q
    |||| ||||||||||| |||||||||   ||| ||||| ||||||||| ||||||| ||||||||||| |||||||||||||       |||| | ||||    
T  48118336 gttatactttattgttgttctctaaagcaatgattgctattaaaaattgagaatgaaacatttgtgatctgagcggttacac-------ctatggatttc 48118428  T
Q  322 aaaagtaactattatctgtctctcataatataaacctctttttcattccccttttgttcttct 384  Q
    |||||||||||       ||||||| ||| |||||||||||||||||| |||||| |||||||    
T  48118429 aaaagtaacta-----cctctctcacaatgtaaacctctttttcattcaccttttattcttct 48118486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 48118175 - 48118227
Alignment:
Q  91 gtacgtgtttctaattccactctttatgatcatcatttgtttcattttcattt 143  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  48118175 gtacgtgtttctaattccactcattacgatcatcatttgtttcatttttattt 48118227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 33358349 - 33358295
Alignment:
Q  89 atgtacgtgtttctaattccactctttatgatcatcatttgtttcattttcattt 143  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  33358349 atgtatgtgtttctaattccactctttacgatcatcatttgtttcatttttattt 33358295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 33358458 - 33358375
Alignment:
Q  18 gctctcaatttctcaataaattcaaagataggactaaaactc--aaaataaaaacaaagaaagtgcatgtaggatgtacgtgtttct 102  Q
    |||||||||||||||||||||||||||| | |||| ||||||  ||||||||||||   | |||||||||| |||||||||||||||    
T  33358458 gctctcaatttctcaataaattcaaagacatgactcaaactcaaaaaataaaaaca---agagtgcatgtatgatgtacgtgtttct 33358375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 33357998 - 33357918
Alignment:
Q  225 acactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacacct 305  Q
    ||||||||||||||||||| |||   ||| |||||| |||||||| ||||||| |||| | ||||||||||||||||||||    
T  33357998 acactttattgtttttctcgaaagcaatgattgctgataaaaattgagaatgaaacatctttgatttgagcggttacacct 33357918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 393
Target Start/End: Complemental strand, 33357865 - 33357812
Alignment:
Q  340 tctctcataatataaacctctttttcattccccttttgttcttcttctctgcct 393  Q
    ||||||| ||| |||||||||||||||||| |||||| ||||||||||||||||    
T  33357865 tctctcacaatgtaaacctctttttcattcaccttttattcttcttctctgcct 33357812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University